Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36530 687 / 0 ENO2, LOS2 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1) AT1G74030 504 / 2e-174 ENO1 enolase 1 (.1) AT2G29560 409 / 2e-137 ENOC cytosolic enolase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035579 [exp] 781 / 0 AT2G36530 775 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1) Lus10003374 [exp] 756 / 0 AT2G36530 799 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1) Lus10002844 [exp] 756 / 0 AT2G36530 800 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1) Lus10015028 [exp] 683 / 0 AT2G36530 802 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1) Lus10038904 [exp] 672 / 0 AT2G36530 792 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1) Lus10027255 [exp] 506 / 5e-175 AT1G74030 799 / 0.0 enolase 1 (.1) Lus10038963 [exp] 504 / 4e-174 AT1G74030 808 / 0.0 enolase 1 (.1) Lus10040711 [exp] 397 / 5e-132 AT2G29560 789 / 0.0 cytosolic enolase (.1) Lus10016447 [exp] 350 / 1e-113 AT2G29560 713 / 0.0 cytosolic enolase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G116800 [exp] 719 / 0 AT2G36530 814 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1) Potri.015G131100 [exp] 692 / 0 AT2G36530 811 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1) Potri.012G057500 [exp] 503 / 1e-173 AT1G74030 810 / 0.0 enolase 1 (.1) Potri.009G040700 [exp] 422 / 5e-142 AT2G29560 809 / 0.0 cytosolic enolase (.1) Potri.012G129300 [exp] 262 / 8e-84 AT2G36530 260 / 1e-85 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, ENOLASE 2, Enolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0227 [flax] [poplar] Enolase_N PF03952 [flax] [poplar] Enolase_N Enolase, N-terminal domain CL0256 [flax] [poplar] Enolase_TIM PF00113 [flax] [poplar] Enolase_C Enolase, C-terminal TIM barrel domain
Representative CDS sequence Show only first row Show all	>Lus10008647 pacid=23180064 polypeptide=Lus10008647 locus=Lus10008647.g ID=Lus10008647.BGIv1.0 annot-version=v1.0 ATGTCGATCACCATCGTTTCCGTCAAGGCTCGCCAGATCTTCGACAGCCGTGGCAATCCTACCGTCGAGGTTCGTATGCCTCTCTCTCCCTCCCTGTCTC TCATCATACCTTTGATTCGTAATCGTGGGAGGAAACGAAACAGTTTCGAGCTAGTTTCCGAAATCGGATCATCTGTTGTTGTTGTTCTTGTTTTAGTGGA GATATTGATTGAGCTTCGATTTTGGATTTGTTCGCAGACTGATGTGAAGTTGTCCGACGGATATTTGGCGAGAGCCGCCGTTCCGAGCGGTGCTTCAACT GGCATCTACGAGGCTCTTGAGCTCAGGGATGGCGGATCGGAATACCTTGGAAAAGGTGTCTCCAAGGCTGTTGACAACGTGAATTCCATTATTGGACCTG CATTGGTTGGCAAGGACCCCACTGAGCAGACTGCTATCGACACGTTTATGGTTCAGCAACTCGATGGAACTGTAAACGAATGGGGTTGGTGCAAGCAGAA GCTTGGAGCAAATGCTATCCTGGCTGTGTCTCTTGCAGTCTGCAAAGCCGGAGCTCATGCAAAGGGTATCCCACTCTATAAGCACATTGCAAACCTTGCT GGAAACTCGAAACTGGTGCTGCCTGTTCCTGCTTTTAATGAATTCATGATCCTGCCCACTGGAGCTTCCTCTTTCAAAGAAGCCATGAAGATGGGTGCTG AAGTCTACCATAATTTGAAGTCCGTAATCAAGAAGAAGTACGGTCAGGATGCAACTAATGTCGGTGACGAGGGTGGCTTTGCACCTAACATTCAGGAAAA CAAAGAAGGACTTGAGCTGCTCAAGACTGCTATTGCTAAAGCTGGTTACACCGATAAAGTTGTTATCGGGATGGATGTTGCAGCCTCCGAGTTTTACGGG TCAGACAAGACATACGACCTGAACTTCAAGGAAGAGAACAACAACGGGAAAGCAAAGATCTCCGGTGAAGCCCTCAAGGATCTTTACAAGTCATTCGTGA CCGAGTACCCAATTGTGTCGATCGAGGACCCCTTCGACCAAGATGACTGGGAACACTACAACAAGATGACCACCGAAATCGGAGAGAAAGTCCAGATTGT GGGAGACGATCTGCTAGTCACCAACCCTAAGAGGGTCGAGAAGGCTATCAAGGAAAAGTCCTGCAATGCTCTCCTTCTCAAGGTTAACCAAATCGGATCC GTGACCGAGAGTATCGAAGCAGTGAAGATGTCCAAGCGTGCAGGATGGGGTGTGATGGCCAGCCACCGCAGTGGTGAAACCGAGGACACATTTATCGCCG ATTTATCAGTCGGTCTGTCCACGGGGCAAATCAAGACCGGCGCACCTTGCCGATCTGAGCGTCTTGCCAAGTATAACCAGAACAACAACGGGAAAGCAAA GATCTCCGGTGAAGCCCTCAAGGATCTTTACAAGTCATTCGTGACCGAGTACCCAATTGTGTCGATCGAGGACCCCTTCGACCAAGATGACTGGGAACAC TACAACAAGATGACCACCGAAATCGGAGAGAAAGTCCAGATTGTGGGAGACGATCTGCTAGTCACCAACCCTAAGAGGGTCGAGAAGGCTATCAAGGAAA AGTCCTGCAATGCTCTCCTTCTCAAGGTTAACCAAATCGGATCCGTGACCGAGAGTATCGAAGCAGTGAAGATGTCCAAGCGTGCAGGATGGGGTGTGAT GGCCAGCCACCGCAGTGGTGAAACCGAGGACACATTTATCGCCGATTTATCAGTCGGTCTGTCCACGGGGCAAATCAAGACCGGCGCACCTTGCCGATCT GAGCGCCTTGCCAAGTACAACCAGTTGTTGAGAATCGAGGAAGAGCTGGGTTCTGAAGCAGTGTACGCGGGAGCCAACTTCAGAAAGCCTGTTGAGCCGT ATTAA
AA sequence Show only first row Show all	>Lus10008647 pacid=23180064 polypeptide=Lus10008647 locus=Lus10008647.g ID=Lus10008647.BGIv1.0 annot-version=v1.0 MSITIVSVKARQIFDSRGNPTVEVRMPLSPSLSLIIPLIRNRGRKRNSFELVSEIGSSVVVVLVLVEILIELRFWICSQTDVKLSDGYLARAAVPSGAST GIYEALELRDGGSEYLGKGVSKAVDNVNSIIGPALVGKDPTEQTAIDTFMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHAKGIPLYKHIANLA GNSKLVLPVPAFNEFMILPTGASSFKEAMKMGAEVYHNLKSVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLKTAIAKAGYTDKVVIGMDVAASEFYG SDKTYDLNFKEENNNGKAKISGEALKDLYKSFVTEYPIVSIEDPFDQDDWEHYNKMTTEIGEKVQIVGDDLLVTNPKRVEKAIKEKSCNALLLKVNQIGS VTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLSTGQIKTGAPCRSERLAKYNQNNNGKAKISGEALKDLYKSFVTEYPIVSIEDPFDQDDWEH YNKMTTEIGEKVQIVGDDLLVTNPKRVEKAIKEKSCNALLLKVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLSTGQIKTGAPCRS ERLAKYNQLLRIEEELGSEAVYAGANFRKPVEPY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10008647 [exp]	0	1
AT5G08680			ATP synthase alpha/beta family...		Lus10035264 [exp]	1.7	0.9748
AT5G60640		ATPDI2, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10037403 [exp]	2.0	0.9742
AT5G08680			ATP synthase alpha/beta family...		Lus10034632 [exp]	3.0	0.9723
AT1G24360			NAD(P)-binding Rossmann-fold s...		Lus10036980 [exp]	3.7	0.9499
AT5G07350		TSN1, AtTudor1	Arabidopsis thaliana TUDOR-SN ...		Lus10043020 [exp]	3.9	0.9604
AT3G60050			Pentatricopeptide repeat (PPR)...		Lus10038863 [exp]	4.5	0.9470
AT5G66680		DGL1	DEFECTIVE GLYCOSYLATION, dolic...		Lus10014330 [exp]	5.5	0.9599
AT1G53240		mMDH1	mitochondrial malate dehydroge...		Lus10013680 [exp]	6.3	0.9620
AT4G16180			unknown protein		Lus10037780 [exp]	6.7	0.9486
AT1G11680		EMB1738, CYP51A...	embryo defective 1738, CYTOCHR...		Lus10004146 [exp]	8.8	0.9596

Compare expression of checked genes

Lus10008647 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.