Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42820 332 / 1e-114 C3HZnF ATU2AF35B Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT1G27650 330 / 2e-113 C3HZnF ATU2AF35A U2 snRNP auxiliary factor small subunit, putative (.1.2) AT1G10320 135 / 2e-35 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT3G44785 106 / 4e-29 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003375 [exp] 383 / 5e-134 AT5G42820 357 / 3e-124 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10002845 [exp] 383 / 5e-134 AT5G42820 355 / 1e-123 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10009389 [exp] 350 / 5e-121 AT5G42820 362 / 3e-126 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10020540 [exp] 337 / 8e-117 AT1G27650 323 / 7e-112 U2 snRNP auxiliary factor small subunit, putative (.1.2) Lus10038139 [exp] 139 / 6e-37 AT1G10320 570 / 0.0 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10010687 [exp] 65 / 2e-11 AT1G10320 288 / 9e-88 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G116700 [exp] 373 / 4e-130 AT5G42820 295 / 7e-100 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.004G188900 [exp] 355 / 6e-123 AT5G42820 311 / 4e-106 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.005G258000 [exp] 332 / 1e-114 AT1G27650 352 / 1e-122 U2 snRNP auxiliary factor small subunit, putative (.1.2) Potri.002G003000 [exp] 320 / 1e-109 AT1G27650 349 / 2e-121 U2 snRNP auxiliary factor small subunit, putative (.1.2) Potri.009G149600 [exp] 129 / 1e-37 AT1G27650 137 / 1e-41 U2 snRNP auxiliary factor small subunit, putative (.1.2) Potri.004G228600 [exp] 134 / 9e-35 AT1G10320 462 / 1e-151 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.007G028500 [exp] 43 / 0.0002 AT4G36690 601 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10008648 pacid=23180069 polypeptide=Lus10008648 locus=Lus10008648.g ID=Lus10008648.BGIv1.0 annot-version=v1.0 ATGGCGGAGCATTTGGCGTCGATATTCGGAACGGAGAAAGACAGAGTCAACTGTCCGTTCTACTTCAAGATCGGAGCGTGCCGCCATGGCGACCGATGCT CCAGGCTCCACACCAAGCCGAGCATCAGCCCAACTCTCCTCCTCGCTAACATGTACCAGCGTCCCGATATGCTCACTCCGGGCGTCGATTCCGCTTCTCA GTCGCAAGCTCTCGATCCTCGCAAGATCCAGGATCACTACGAGGATTTCTACCAGGACTTGTTCGAGGAGCTCAACAAGTATGGACACATCGAGAGCCTC AACATCTGTGACAATCTCGCCGACCACATGGTAGGGAATGTGTATGTTCAGTTTAGGGAAGAAGATCATGCTGCTGCGGCGCTTCAGAATCTGACGGGTC GGTTCTATGCTGGTCGGCCTATCATTGTTGATTTCTCTCCAGTGACCGATTTCCGGGAGGCAACATGTAGACAGTATGAGGAGAATGTATGCAACAGAGG TGGCTACTGCAACTTCATGCATCTGAAGAAGATCAGCAGGGAATTGAGGAGGCAGCTGTTTGGGAGGGACAAGAGAAGGCGAAGCCGTAGCAGGAGCCAC AGTCCACAGAGGCATCGCGGTGGTGGTTACGACGACCGCCCTGCACATGGTGGTGGTGGTCGTGGCTACGGTAGAAGAGACGACGAGAGGGGTCACCACG GGAGGGGAGGAAGGAGGCCAAGGAACCGAAGTCCAGGACGAAGAAGGAGCAGGAGCCCCGGAGCAAGGAGGAACAGGAGCCCGGTTCGTGAAAACAGTGT GGAGAGAAGGGCTAGAATCGAACAATGGAATAAGGAGAGAGAGGTGGTTGAACCTGTTACTGGTCTTGTTGGTGGTAGTGTTGACAGGAACAGCAATGGC AATGGGGAGGCGAATAACGGAAGCCCTGCAGATGATCGTCAGTATTAG
AA sequence Show only first row Show all	>Lus10008648 pacid=23180069 polypeptide=Lus10008648 locus=Lus10008648.g ID=Lus10008648.BGIv1.0 annot-version=v1.0 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLANMYQRPDMLTPGVDSASQSQALDPRKIQDHYEDFYQDLFEELNKYGHIESL NICDNLADHMVGNVYVQFREEDHAAAALQNLTGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRELRRQLFGRDKRRRSRSRSH SPQRHRGGGYDDRPAHGGGGRGYGRRDDERGHHGRGGRRPRNRSPGRRRSRSPGARRNRSPVRENSVERRARIEQWNKEREVVEPVTGLVGGSVDRNSNG NGEANNGSPADDRQY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42820	C3HZnF	ATU2AF35B	Zinc finger C-x8-C-x5-C-x3-H t...		Lus10008648 [exp]	0	1
AT2G02880			mucin-related (.1)		Lus10030486 [exp]	2.6	0.8085
AT4G39260		ATGRP8, CCR1, G...	glycine-rich RNA-binding prote...		Lus10026343 [exp]	3.9	0.7495
AT3G47570			Leucine-rich repeat protein ki...		Lus10009394 [exp]	6.9	0.7486
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10035419 [exp]	8.5	0.7940
AT3G23600			alpha/beta-Hydrolases superfam...		Lus10000668 [exp]	11.5	0.6932
AT1G17030			unknown protein		Lus10024442 [exp]	12.1	0.7765
AT4G15720			Tetratricopeptide repeat (TPR)...		Lus10037505 [exp]	14.7	0.7377
					Lus10039779 [exp]	15.0	0.7535
AT2G21660		CCR2, ATGRP7, G...	GLYCINE-RICH RNA-BINDING PROTE...		Lus10023569 [exp]	15.1	0.7131
AT4G36500			unknown protein		Lus10025997 [exp]	15.4	0.7459

Compare expression of checked genes

Lus10008648 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.