Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12100 673 / 0 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G59900 304 / 2e-90 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 293 / 1e-87 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G55840 290 / 7e-84 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 279 / 1e-83 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63330 277 / 2e-83 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 278 / 4e-83 RPF2 rna processing factor 2 (.1) AT4G19440 281 / 2e-82 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G16880 279 / 2e-82 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 278 / 4e-82 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023863 [exp] 1057 / 0 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10035577 [exp] 662 / 0 AT5G12100 363 / 8e-119 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10014365 [exp] 410 / 6e-135 AT5G12100 268 / 4e-81 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10036020 [exp] 298 / 2e-88 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019524 [exp] 294 / 3e-87 AT3G54980 716 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010410 [exp] 288 / 3e-84 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026558 [exp] 282 / 3e-82 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012139 [exp] 282 / 3e-82 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013841 [exp] 279 / 6e-81 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G249800 [exp] 849 / 0 AT5G12100 774 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.001G236800 [exp] 323 / 4e-97 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G105700 [exp] 311 / 3e-93 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G046000 [exp] 306 / 3e-93 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G105400 [exp] 314 / 5e-93 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G025600 [exp] 293 / 4e-88 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G217600 [exp] 286 / 9e-85 AT2G16880 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G137200 [exp] 287 / 1e-84 AT1G13630 805 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.001G368700 [exp] 289 / 1e-83 AT5G55840 1272 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G105600 [exp] 279 / 2e-82 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10008650 pacid=23180084 polypeptide=Lus10008650 locus=Lus10008650.g ID=Lus10008650.BGIv1.0 annot-version=v1.0 ATGGCGACCAAGGTACAGCGTCTCCTTCCAAAATTCCCGTTCACCACTTCCCTAAAGGAGCTAATACCCATCAGCACTTCTTCTTCTTCCTCTTTTACTT CACTTTCTCCGCCGCACCATGAACTCACTAACGACCAGGACCGTCATGAGCAAGCTGGCAAGCTTCTGGCCCTCCTCAAACAATCCGGCAATAGCGAGAA AGCATACGACTTCACCAAATCCCTACTCCAATCAAAATCTCCTTTCTCATCTCCTTCCGATCTCCTATCCTTCGTCTCCACCTCGTCTCCTTCCTCCACC CAATCTCTCTCCAACGTGTTACTCGCCGTAAGCTGCGAGTCCAAATTTCCGTCGGGAGGAAGAAGTCGGAACCTTTCTCCGTTTCTAACAGCTAGGGAGT GTATGGGGGAGCTAGTGGAGACGAAGCAGTTCGAAAAAGTGCTCGATTTGTTCTCGGAGACTTTGGAGTTCGGTTTCAGGCCTGATACGTTCATGTACGG GAAAGCTGTACAATCAGCGGTGAAATTGGGTGATATTGAGAAAGCGAAAGAGCTTCTGGAGTCAATGAAGAGAAGCGGCGTCCGTCCTAACGTGTTTGTT TACAATGTTTTGTTAGGTGGGCTGTGTAAAGAGAGGAGGATCAATGATGCCGAGAAGGTGTTCGACGAAATGCGTGAAAGAAACTTAGCTGCTAACAAGG TAACTTTCAATACGTTGATTGATGGATATTGTAAAGTGGGTGACGTTGAAGCAGCGTTTAGGTTGAGAGATAGGATGAAGGAGGAGAAAGTTGAGCCTAG TGTTGTAACGTATAACACACTACTTAGTGCTCTGTGTAAGGCTAAATTGATGGGAGATGCAGGGATGTTGATAAAGGAGATGGAAGCCAACGACTTTACA CCCGATAGGCTTACTTACTCAATACTTTTCGATGGGTATTCGAAGAGTGGAGATGGAGTAGAGGGTGCACTGGAGCTGTACGAGGCGGCTGTTTCCAGAG GAGTTCGGATTGATAGCTACACCAGTAGCATTCTGCTGAATGGGTTGTGCAAACAAGGTCAAGTTGGGAAGGCTGAAGAGGCTTTGAAGATGTTTTTGGA GAATGGGTTGATTGCTGATGAGATTGTGTACAACACTATTGTGAATGGGTACTGTTTAGTCGGTGAGATGAACAGAGCGATCCAGACCATTGAGGATATG GAGAGTAAAGGGCTGAGACCGAATAGTATAACTTTCAACAGTTTGATTCATATGTTTTGTGGGATGCAAAAGATGGATGAGGCTGAGAAATGGATAATGA ACATGGTGAAGAAGGGAGTTTCTCCAACTGTGGAAACATACAACACTCTCATTGATGGTTACGGAGAAGCATCGATCTTTGACCGTTGCTTTGAACTTCT TGAAGAAATGGAAGAGAAGCGGGTAAAGCCGAATGTGGTAACATATGGGTCGTTGATCAACCGTTTATGCAAGCAAGGGAAGATGCTTGAAGCAGAGATA GTCCTCAGAGATATGTCGGGGAAGGAGGTTTCAGCTAATGCTCAGATATACAATATGCTTATTGATGGCAGCTGTATATCAGGGAAATTGAAAGATGCTT TCAGATTCTTCGACGAGATGTCGAGAAGTGAAATCCCCGCTACGCTTGTCACCTACAATGCACTGATGAACGGTCTTTGTAAAAAGGGGAAGCTAACAGA AGCTGAGGACTTGTTTCAAGAAATTCAGAATCATGGTCTTCTAAGTCCAGATGTTATAACATACAACTGTTTGATCTCAGGGTATGCAAATTCTGGAAGG AGGGAAAGATCTCTTGAGCTATACAAAGCCATGAAGGAGTCAGGAATTCAACCTACTGTAAGTACATACCATCCCTTAATCAAAGAATGGGGCAAGGACG GGTTAGAGATAGTGACTAAATTGTTCGACGAAATGCTGCAAATGAACTTGGTTCCTGACAGGGTTGTGTATAATGCCGTCATCTTTTGTTTTGTGGAGGC TGGACTCATAGAAAGAGCCTTTACTTTACTGGATGAGATGATTGCAAGGGAGATTCCTGCAGATAGGATGACGTACAACAATCTGATTCGTGGACGGGTT CGAGAAGGGAAGTTGTCTGATGTGAATGATCTTGTTGCTGATATGAAGGCCAAAGGACTAGCTCTTAAAGCTGATACCTACAATTTACTAATCAAAGGCT TATGTGAGCTGAAGGATTTTGGTGGAGCATACTCTTGGTACAGAGAAATGTATGGGAATGGTATGTTACCGAATATCGGTATCTGCAATGAACTAGTCTC TGGCCTAAGAGAAGTAGGAAAGGCTGAAGAAGCCGAGGTTATATGCGCTGAGTTGAGCATGAAAGGGGTAGATGATCTAAGCCCTAGCGAGGAACTATCT ACGGTTTAG
AA sequence Show only first row Show all	>Lus10008650 pacid=23180084 polypeptide=Lus10008650 locus=Lus10008650.g ID=Lus10008650.BGIv1.0 annot-version=v1.0 MATKVQRLLPKFPFTTSLKELIPISTSSSSSFTSLSPPHHELTNDQDRHEQAGKLLALLKQSGNSEKAYDFTKSLLQSKSPFSSPSDLLSFVSTSSPSST QSLSNVLLAVSCESKFPSGGRSRNLSPFLTARECMGELVETKQFEKVLDLFSETLEFGFRPDTFMYGKAVQSAVKLGDIEKAKELLESMKRSGVRPNVFV YNVLLGGLCKERRINDAEKVFDEMRERNLAANKVTFNTLIDGYCKVGDVEAAFRLRDRMKEEKVEPSVVTYNTLLSALCKAKLMGDAGMLIKEMEANDFT PDRLTYSILFDGYSKSGDGVEGALELYEAAVSRGVRIDSYTSSILLNGLCKQGQVGKAEEALKMFLENGLIADEIVYNTIVNGYCLVGEMNRAIQTIEDM ESKGLRPNSITFNSLIHMFCGMQKMDEAEKWIMNMVKKGVSPTVETYNTLIDGYGEASIFDRCFELLEEMEEKRVKPNVVTYGSLINRLCKQGKMLEAEI VLRDMSGKEVSANAQIYNMLIDGSCISGKLKDAFRFFDEMSRSEIPATLVTYNALMNGLCKKGKLTEAEDLFQEIQNHGLLSPDVITYNCLISGYANSGR RERSLELYKAMKESGIQPTVSTYHPLIKEWGKDGLEIVTKLFDEMLQMNLVPDRVVYNAVIFCFVEAGLIERAFTLLDEMIAREIPADRMTYNNLIRGRV REGKLSDVNDLVADMKAKGLALKADTYNLLIKGLCELKDFGGAYSWYREMYGNGMLPNIGICNELVSGLREVGKAEEAEVICAELSMKGVDDLSPSEELS TV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12100			pentatricopeptide (PPR) repeat...		Lus10008650 [exp]	0	1
AT3G62080			SNF7 family protein (.1.2)		Lus10038021 [exp]	1.4	0.8657
AT1G52620			Pentatricopeptide repeat (PPR)...		Lus10036090 [exp]	2.4	0.8487
AT2G04865			Aminotransferase-like, plant m...		Lus10007358 [exp]	4.2	0.8315
AT5G36930			Disease resistance protein (TI...		Lus10023487 [exp]	5.8	0.8497
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10013548 [exp]	7.1	0.8139
AT2G24640		UBP19	ubiquitin-specific protease 19...		Lus10020116 [exp]	9.6	0.8387
AT1G58025			DNA-binding bromodomain-contai...		Lus10037368 [exp]	10.2	0.8281
AT1G69380		RRG	RETARDED ROOT GROWTH, Protein ...		Lus10037127 [exp]	18.0	0.8132
AT1G79490		EMB2217	embryo defective 2217, Pentatr...		Lus10037517 [exp]	18.5	0.8274
AT2G26200			S-adenosyl-L-methionine-depend...		Lus10024993 [exp]	22.0	0.8266

Compare expression of checked genes

Lus10008650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.