Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07960 984 / 0 PIP5K6 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT3G56960 929 / 0 PIP5K4 phosphatidyl inositol monophosphate 5 kinase 4 (.1) AT2G41210 921 / 0 PIP5K5 phosphatidylinositol- 4-phosphate 5-kinase 5 (.1) AT1G21980 718 / 0 ATPIPK1, ATPIP5K1 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) AT1G77740 717 / 0 PIP5K2 phosphatidylinositol-4-phosphate 5-kinase 2 (.1) AT2G26420 655 / 0 PIP5K3 1-phosphatidylinositol-4-phosphate 5-kinase 3 (.1) AT1G60890 516 / 5e-173 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) AT1G10900 498 / 3e-166 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT3G09920 399 / 3e-127 PIP5K9 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) AT1G01460 249 / 5e-75 ATPIPK11 Phosphatidylinositol-4-phosphate 5-kinase, core (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002734 [exp] 1451 / 0 AT3G07960 990 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10039507 [exp] 1142 / 0 AT3G07960 942 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10024151 [exp] 1132 / 0 AT3G07960 918 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10039011 [exp] 949 / 0 AT3G56960 1174 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10027306 [exp] 933 / 0 AT3G56960 1185 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10003819 [exp] 917 / 0 AT3G56960 1148 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10010458 [exp] 915 / 0 AT3G56960 1147 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10029661 [exp] 705 / 0 AT1G21980 1115 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10018200 [exp] 524 / 9e-176 AT1G21980 1172 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G196000 [exp] 1032 / 0 AT3G07960 1094 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.001G027900 [exp] 1027 / 0 AT3G07960 1107 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.016G036800 [exp] 957 / 0 AT3G56960 1214 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Potri.002G088100 [exp] 726 / 0 AT1G21980 1136 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.005G172800 [exp] 719 / 0 AT1G21980 1139 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.004G139900 [exp] 510 / 4e-171 AT1G21980 948 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.019G015768 [exp] 507 / 8e-170 AT1G21980 947 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.006G121200 [exp] 419 / 5e-135 AT3G09920 1230 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Potri.001G211200 [exp] 389 / 5e-124 AT1G60890 1041 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Potri.003G019100 [exp] 364 / 3e-114 AT1G60890 1004 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF01504 [flax] [poplar] PIP5K Phosphatidylinositol-4-phosphate 5-Kinase CL0251 [flax] [poplar] MORN PF02493 [flax] [poplar] MORN MORN repeat
Representative CDS sequence Show only first row Show all	>Lus10008651 pacid=23161935 polypeptide=Lus10008651 locus=Lus10008651.g ID=Lus10008651.BGIv1.0 annot-version=v1.0 ATGAGCAAAGAGTACAAAGGCATTGTGAAGGCCTGGGAAGCGACGGTAAGGAAATCACAAGGTCACACGAAGAAACGATCACACAGCATCTTCGGCACGA TGATGATGTCAGCTGCCTCTGTGGCGCACGCGGACGACGAAGATGAACCTTCGACTGCAACACAACAGCAGCATCATAAAGAGGTTGTGCTTCCCAATGG AGACTTCTACACGGGGCAATGGCTGGAAGGGTTCCCACACGGCCATGGGAAGTATCTATGGGGTGGTGATGGGTGTATGTATGTTGGGGAATGGCAAAGG GGGAAGACGACTGGGAAAGGAAGGTTCTCTTGGCCGTCTGGTGCGACATATGAAGGGGATTTGAAAGCCGGGTACATGGATGGCAAAGGTACTTACACGT CTTCCTCCGGGGACACTTACAAAGGCTGCTGGGTTATGAATTTGAAGCATGGACAAGGCGTTGAGAGCTTTGTTGATGGGGATTGTTATCATGGTGAGTG GAAAAAGGGTTTGCAAGATGGGGAAGGGAAGTACCTATGGAAGAAGAATGGGAGTAGCTATGTTGGTTCATGGAAAAATGGGGTTATGAATGGGAGTGGT GTTATGAGTTTTGGTAATGGTAATGTTTATGATGGGAATTGGGAAGAAGGGTTTCCTAAAGGGGAAGGGACTTTAACATTTGCTGATAATGGTGGTTCCC ATGCTGGTGTGTGGAACAAAGATGATGTTGGTAGTAGTGATCATCATCAGGAGTTGTTCAATGGGGACTTGGTGGGATGTGTGGTTTGTGTTAGTGAGGC TGTTCCGATTTATCCGTCCCAAAAGTCTTGTTACGTGCCCGGTGGTTCGGATCCGGGGGGTTTTGTGAAGCAGATGAAAGCTCATAGTTATGATGGGAAC CCTGTCGATGGGAGGTTGAGTAATTACAGTATGAGTTCTTGGGATGGGAGTGATTCTGGTGTTAGTGGGTTTGATGGGGATGGGGAGGAAGGTGTTGCAT TGAATGAGAACTTGAAGAAGTTGAGGTTACAGCCTGCCAAGAAGCAAGGAGTGACCATATCGAAAGGGCATAAGAACTATGCGCTCATGCTCAATCTCCA GCTTGGAATCAGACATTCGGTAGGGCGGCCCGGTCCTCAGGTATCTCTTGATCTAAAGTCTTCAGCTTTTGACCCGCGGGAGAAAGTATGGACTAAATTC CCACCTGAAGGGTCAAAGCACACTCCACCTCACCAGTCTTGTGACTTCAGATGGAAGGACTACTGCCCTTTAGTTTTCAGGACTCTTAGGAAATTGTTCA ATGTTGATGCAGCTGATTACATGTTGTCTATATGTGGGAACGACGCACTTCGCGAGCTGTCTTCTCCTGGCAAGAGTGGGAGCTTCTTTTACTTGACTAA TGACGATCGTTACATGATTAAGACTATGAAGAAGGCTGAAGCAAAAGTACTCATTAGGATGCTGCCAGCATACTATAATCATGTTCGGAAATTCGAGAAC ACCTTGGTCACGAAATATTACGGGCTTCATTGCGTGAAATTACCAGGGCCAAATCAAAAGAAGGTACGCTTCATTATAATCGGAAATCTGTTCAACACCG AGTATGCGATTCATAGGCGATTCGATTTGAAAGGCTCTTCTCATGGTCGTATCACATGTAAACCCGAGTCCGAAATCGATGCCTCAACAACACTCAAGGA TCTTGACCTCAACTTTCTATTCCGGTTGCAGAGAGCTTGGTATCAAGAGTTCTGCAGGCAAATAGACAGAGACTGTGAACTTCTGGAGCAAGAGAGGGTC ATGGATTACAGTCTGTTAGTTGGCATTCACTTCCGAGGGGCTTCACATAGGGATGCCTTGACACCTCCTAGAACATCCGGAGTTCGCACCCCGACTGGCC TTCGTACTCCAACGCGGAATGGAGATGCTGACAGTAATTCTGGAGCTCCTAGACTCTCTAGAGCGGACATGGATCAGCTTGTTCTTGATCCTTCCCGGTG GCCTTCCATCAAACTAGGGATGAACATGCCAGCAAGAGCGGAGAAGACTAAAAGGAGTGAAGGCGAACTCCAGCTGGTCGGAGAACCAACCGGCGAACTT TATGAGGTGATCCTGACGTTCGGCATCATAGACGTACTACAAGACTATGACATCAGCAAAAAGCTCGAGCATGCATACAAATCAATGCAATACGACCCGA CCTCGATCTCAGCTGTCGATCCGAAGCAGTATTCAAGGCGGTTCAGGGACTTCATCTTCAAAGTCTTCGTCGAGGAAAGCTGA
AA sequence Show only first row Show all	>Lus10008651 pacid=23161935 polypeptide=Lus10008651 locus=Lus10008651.g ID=Lus10008651.BGIv1.0 annot-version=v1.0 MSKEYKGIVKAWEATVRKSQGHTKKRSHSIFGTMMMSAASVAHADDEDEPSTATQQQHHKEVVLPNGDFYTGQWLEGFPHGHGKYLWGGDGCMYVGEWQR GKTTGKGRFSWPSGATYEGDLKAGYMDGKGTYTSSSGDTYKGCWVMNLKHGQGVESFVDGDCYHGEWKKGLQDGEGKYLWKKNGSSYVGSWKNGVMNGSG VMSFGNGNVYDGNWEEGFPKGEGTLTFADNGGSHAGVWNKDDVGSSDHHQELFNGDLVGCVVCVSEAVPIYPSQKSCYVPGGSDPGGFVKQMKAHSYDGN PVDGRLSNYSMSSWDGSDSGVSGFDGDGEEGVALNENLKKLRLQPAKKQGVTISKGHKNYALMLNLQLGIRHSVGRPGPQVSLDLKSSAFDPREKVWTKF PPEGSKHTPPHQSCDFRWKDYCPLVFRTLRKLFNVDAADYMLSICGNDALRELSSPGKSGSFFYLTNDDRYMIKTMKKAEAKVLIRMLPAYYNHVRKFEN TLVTKYYGLHCVKLPGPNQKKVRFIIIGNLFNTEYAIHRRFDLKGSSHGRITCKPESEIDASTTLKDLDLNFLFRLQRAWYQEFCRQIDRDCELLEQERV MDYSLLVGIHFRGASHRDALTPPRTSGVRTPTGLRTPTRNGDADSNSGAPRLSRADMDQLVLDPSRWPSIKLGMNMPARAEKTKRSEGELQLVGEPTGEL YEVILTFGIIDVLQDYDISKKLEHAYKSMQYDPTSISAVDPKQYSRRFRDFIFKVFVEES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07960		PIP5K6	phosphatidylinositol-4-phospha...		Lus10008651 [exp]	0	1
AT1G32930			Galactosyltransferase family p...		Lus10008282 [exp]	10.0	0.7627
AT3G25620		ABCG21	ATP-binding cassette G21, ABC-...		Lus10034387 [exp]	11.1	0.7541
AT3G07400			lipase class 3 family protein ...		Lus10009590 [exp]	13.1	0.7566
AT1G05370			Sec14p-like phosphatidylinosit...		Lus10041206 [exp]	13.3	0.7536
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Lus10033597 [exp]	19.4	0.7523
AT1G38131			O-fucosyltransferase family pr...		Lus10025630 [exp]	21.4	0.7320
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10042785 [exp]	24.5	0.7390
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10023844 [exp]	27.1	0.7238
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10005459 [exp]	28.8	0.7232
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10005559 [exp]	38.4	0.7333

Compare expression of checked genes

Lus10008651 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.