Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44110 285 / 4e-94 ATJ3 DNAJ homologue 3 (.1.2) AT5G22060 275 / 4e-90 ATJ2 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) AT3G47940 91 / 2e-20 DNAJ heat shock family protein (.1) AT2G20560 88 / 1e-19 DNAJ heat shock family protein (.1) AT2G20550 87 / 1e-19 HSP40/DnaJ peptide-binding protein (.1.2) AT1G59725 87 / 2e-19 DNAJ heat shock family protein (.1) AT4G28480 84 / 2e-18 DNAJ heat shock family protein (.1.2) AT1G10350 84 / 2e-18 DNAJ heat shock family protein (.1) AT2G22360 84 / 5e-18 DNAJ heat shock family protein (.1) AT5G01390 82 / 5e-18 DNAJ heat shock family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002733 [exp] 504 / 0 AT5G22060 299 / 6e-100 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10013364 [exp] 437 / 2e-155 AT3G44110 291 / 3e-96 DNAJ homologue 3 (.1.2) Lus10004109 [exp] 280 / 9e-93 AT5G22060 597 / 0.0 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10028188 [exp] 226 / 6e-71 AT5G22060 563 / 0.0 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10042891 [exp] 216 / 2e-67 AT5G22060 554 / 0.0 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10030803 [exp] 87 / 3e-19 AT1G10350 434 / 2e-153 DNAJ heat shock family protein (.1) Lus10000631 [exp] 87 / 8e-19 AT2G22360 672 / 0.0 DNAJ heat shock family protein (.1) Lus10013280 [exp] 86 / 8e-19 AT1G10350 422 / 5e-148 DNAJ heat shock family protein (.1) Lus10023148 [exp] 86 / 1e-18 AT2G22360 675 / 0.0 DNAJ heat shock family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G018800 [exp] 300 / 2e-100 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2) Potri.010G243100 [exp] 298 / 3e-99 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2) Potri.009G015700 [exp] 284 / 5e-94 AT3G44110 629 / 0.0 DNAJ homologue 3 (.1.2) Potri.002G141100 [exp] 227 / 1e-71 AT3G44110 504 / 3e-178 DNAJ homologue 3 (.1.2) Potri.014G055300 [exp] 171 / 3e-51 AT3G44110 251 / 5e-81 DNAJ homologue 3 (.1.2) Potri.008G194000 [exp] 94 / 4e-22 AT1G10350 402 / 4e-141 DNAJ heat shock family protein (.1) Potri.017G016000 [exp] 91 / 1e-20 AT2G20560 419 / 4e-147 DNAJ heat shock family protein (.1) Potri.017G016100 [exp] 90 / 3e-20 AT2G20560 420 / 7e-148 DNAJ heat shock family protein (.1) Potri.005G073900 [exp] 88 / 2e-19 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.010G035000 [exp] 87 / 2e-19 AT1G10350 429 / 1e-151 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0392 [flax] [poplar] PF01556 [flax] [poplar] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10008652 pacid=23161960 polypeptide=Lus10008652 locus=Lus10008652.g ID=Lus10008652.BGIv1.0 annot-version=v1.0 ATGTTTGGGAGAGCTCCGAAGAAAAGCGACAACACTAAGTACTATGAGATCCTTGGGGTTTCCCAGAGCGCATCACAGGATGATCTGAAGAAGGCTTATC GCAAAGCAGCTATAAAGAATCATCCTGATAAGGGCGGTGACCCCGAGAAGTTCAAGGAGTTGGCACAAGCTTATGAAGTTCTGAGTGACCCAGAGAAAAG GGACATATATGATCAGTATGGAGAGGATGCCCTCAAGGAAGGAATGGGAGGAGGCGGTGGCGGCCACGATCCCTTTGACATCTTCCAGTCTTTCTTTGGC GGTGGCGGCGGTAATCCTTTTGGTGCTGGTGGGAGCAGTAGGGGCCGAAGGCAGAGGAGGGGTGAAGATGTTGTCCATCCTCTCAAGCCCGACACGGTCA CAGGAGACATTGTTTTCGTGCTACAACAGAAGGAACATCCCAAGTTCAAGCGAAAGGGCGATGATCTGTTTGTTGAGCACACCCTTTCTCTCACAGAGGC TCTATGTGGCTTCCAGTTTGCATTGACTCATTTGGATGGACGACAGCTCCTAATAAAATCCCAACCTGGGGAAGTAGTCAAGCCTGATCAATTCAAGGCA ATAAACGACGAAGGGATGCCAATGTACCAGCGTCCCTTCATGAGAGGAAAGATGTACATCCATTTCGGTGTTGATTTCCCAGACTCACTTTCTCCTGACC AGAGCAAAGCTCTGGAGGGTGTCCTTCCTGCAAGGTCATCGGGTCAGCTCTCGGACATGGAGTTGGACGAGTGCGAGGAGACAACACTGCATGATGTGAA CATCGAAGATGAAATGAGGCGGAAGCAACAGGCAGCCCAGGAGGCCTACGATGAAGACGATGAAGATATGCATGGAGGAGCGCAGAGGGTGCAATGTGCT CAGCAATAA
AA sequence Show only first row Show all	>Lus10008652 pacid=23161960 polypeptide=Lus10008652 locus=Lus10008652.g ID=Lus10008652.BGIv1.0 annot-version=v1.0 MFGRAPKKSDNTKYYEILGVSQSASQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKRDIYDQYGEDALKEGMGGGGGGHDPFDIFQSFFG GGGGNPFGAGGSSRGRRQRRGEDVVHPLKPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFALTHLDGRQLLIKSQPGEVVKPDQFKA INDEGMPMYQRPFMRGKMYIHFGVDFPDSLSPDQSKALEGVLPARSSGQLSDMELDECEETTLHDVNIEDEMRRKQQAAQEAYDEDDEDMHGGAQRVQCA QQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10008652 [exp]	0	1
AT2G35900			unknown protein		Lus10021249 [exp]	2.4	0.8435
AT5G10750			Protein of unknown function (D...		Lus10042428 [exp]	5.5	0.8300
AT5G64920		CIP8	COP1-interacting protein 8 (.1...		Lus10031422 [exp]	5.5	0.8114
AT4G13870		WRNEXO, ATWRNEX...	Werner syndrome-like exonuclea...		Lus10013769 [exp]	6.3	0.8097
AT3G57990			unknown protein		Lus10016270 [exp]	6.6	0.7334
AT1G55460	C2H2ZnF		DNA/RNA-binding protein Kin17,...		Lus10005161 [exp]	8.1	0.8063
AT3G16640		TCTP	translationally controlled tum...		Lus10033959 [exp]	8.9	0.8114
AT5G55630		ATTPK1, ATKCO1	TWO PORE K CHANNEL 1, TWO PORE...		Lus10000044 [exp]	9.8	0.7803
AT1G27350			Ribosome associated membrane p...		Lus10037031 [exp]	9.9	0.7771
AT5G23040		CDF1	CELL GROWTH DEFECT FACTOR 1, P...		Lus10038965 [exp]	10.8	0.7527

Compare expression of checked genes

Lus10008652 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.