Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07030 523 / 0 Eukaryotic aspartyl protease family protein (.1) AT3G54400 504 / 5e-178 Eukaryotic aspartyl protease family protein (.1) AT1G09750 363 / 4e-122 Eukaryotic aspartyl protease family protein (.1) AT1G01300 168 / 6e-47 Eukaryotic aspartyl protease family protein (.1) AT5G10760 166 / 2e-46 Eukaryotic aspartyl protease family protein (.1) AT1G25510 161 / 2e-44 Eukaryotic aspartyl protease family protein (.1) AT3G61820 160 / 4e-44 Eukaryotic aspartyl protease family protein (.1) AT3G18490 154 / 2e-41 Eukaryotic aspartyl protease family protein (.1) AT5G10770 151 / 1e-40 Eukaryotic aspartyl protease family protein (.1) AT1G79720 140 / 9e-37 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026171 [exp] 678 / 0 AT5G07030 494 / 4e-174 Eukaryotic aspartyl protease family protein (.1) Lus10024148 [exp] 489 / 1e-173 AT3G54400 476 / 7e-169 Eukaryotic aspartyl protease family protein (.1) Lus10039503 [exp] 483 / 3e-171 AT3G54400 477 / 3e-169 Eukaryotic aspartyl protease family protein (.1) Lus10003999 [exp] 172 / 2e-48 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10042426 [exp] 139 / 3e-36 AT5G10770 553 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041621 [exp] 135 / 8e-35 AT1G79720 510 / 1e-178 Eukaryotic aspartyl protease family protein (.1) Lus10007335 [exp] 135 / 1e-34 AT3G59080 698 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10042427 [exp] 130 / 6e-33 AT5G10770 476 / 7e-165 Eukaryotic aspartyl protease family protein (.1) Lus10025702 [exp] 132 / 7e-33 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G028200 [exp] 589 / 0 AT3G54400 542 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.003G195500 [exp] 581 / 0 AT3G54400 559 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G104600 [exp] 417 / 4e-143 AT1G09750 531 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G099400 [exp] 166 / 5e-46 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G171700 [exp] 166 / 7e-46 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.010G128200 [exp] 157 / 1e-42 AT1G25510 622 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.015G051800 [exp] 154 / 1e-41 AT3G18490 585 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G063000 [exp] 154 / 2e-41 AT3G20015 560 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.007G106300 [exp] 152 / 9e-41 AT3G20015 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.018G014900 [exp] 141 / 4e-37 AT5G10770 408 / 3e-139 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10008654 pacid=23161970 polypeptide=Lus10008654 locus=Lus10008654.g ID=Lus10008654.BGIv1.0 annot-version=v1.0 ATGAAAACCCACAACTCCCTGTTCCTCTGTTCCTTCTTCATCTTCTCCTTAGCCTCAGCAGTCTCATCCACCCACTCCTCCCCAAAATGTGACGAAGATG CCAAGGGCTCCTCGTCGACCTTAAGAGTTTTCCACATCTTCAGCCCGTGCTCACCGTTCCGGCCACAGAAGCCACTCCCGTGGGAGGAGAGTGTGCTTCA GTTGCAGGCCAAGGACCAGGCTAGGCTTCTGTACCTATCTAGCTTGGTCGCCAAGAAATCTGTTGTCCCGATTGCTTCCGGGAGGCAAGTCATCCAGAGC CCTACTTACATCTTGAGGGCTAAGATTGGTACCCCGCCTCAGACTATGTTGGTGGCTCTTGATACTAGCAATGATGCTGCTTGGATCCCTTGCAATGGCT GTGTTGGTTGCTCTTCCTCTGTTTTTGACTCTGCTTCTTCCACTTCTTTCAAGCCTGTCTCCTGCCAAGCCCCTGAATGCAAGCAGGTACCCAACCCTAC TTGCGGTGGAAGCGCGTGCATATTCAACATGACATACGGCAGCTCTTCCCTTGCCGCCAACCTGTCCTCCGACACCATCACTCTCGCCACCGATTCCGTT CCGGGCTACACCTTCGGCTGCGTCCAAACGGCGACTGGCAACTCATTACCGCCACAGGGTCTGTTGGGCCTGGGCCGTGGCCCATTGTCTTTCCTCTCAC AAACCCAAAGCCTTTACCAGTCCACATTCTCTTATTGCCTTCCGAGCTTCAAGTCCCTGAACTTCTCCGGGTCGTTAAGGCTTGGGCCGGTGGGCCAGCC CAAGAATATTAAGTTCACGCCACTGCTTAAGAATCCGAGGAGGTCATCTCTGTATTACGTCAATCTGATCGGGATTAGGGTCGGCAAGACAATTGTTGAC ATTCCGGCTAGTTCTTTGGCCTTCGACGCCGGCACCGGCGCCGGCACCATTATTGACTCCGGCACGGTGTTCACCAGGCTAGTAGCGCCAGCGTACACAG CGGTGCGTGACGAGTTCCGAAAGCGCGTGGGTGGAAACGCCACCGTGACATCCCTTGGAGGGTTCGACACGTGCTACACGACCCCCCTCGTGCCCCCTCC GACGATCACGTTCCTGTTCGCCGGCATGAACGTGACCTTGCCGGCCGACAACATATTGATCCACAGCAGCGCCGGGAGCACGTCGTGCCTGGCGATGGCG GCGGCGCCGGACAACGTGAACTCGGTGGTGAACGTGATCGCCAACATGCAGCAGCAGAACCACCGCATCTTCTTCGACGTGGCGAACTCGAGGGTTGGAG TGTCCCGTGAGCAATGCTCGTGA
AA sequence Show only first row Show all	>Lus10008654 pacid=23161970 polypeptide=Lus10008654 locus=Lus10008654.g ID=Lus10008654.BGIv1.0 annot-version=v1.0 MKTHNSLFLCSFFIFSLASAVSSTHSSPKCDEDAKGSSSTLRVFHIFSPCSPFRPQKPLPWEESVLQLQAKDQARLLYLSSLVAKKSVVPIASGRQVIQS PTYILRAKIGTPPQTMLVALDTSNDAAWIPCNGCVGCSSSVFDSASSTSFKPVSCQAPECKQVPNPTCGGSACIFNMTYGSSSLAANLSSDTITLATDSV PGYTFGCVQTATGNSLPPQGLLGLGRGPLSFLSQTQSLYQSTFSYCLPSFKSLNFSGSLRLGPVGQPKNIKFTPLLKNPRRSSLYYVNLIGIRVGKTIVD IPASSLAFDAGTGAGTIIDSGTVFTRLVAPAYTAVRDEFRKRVGGNATVTSLGGFDTCYTTPLVPPPTITFLFAGMNVTLPADNILIHSSAGSTSCLAMA AAPDNVNSVVNVIANMQQQNHRIFFDVANSRVGVSREQCS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54400			Eukaryotic aspartyl protease f...		Lus10008654 [exp]	0	1
AT3G50330	bHLH	HEC2, bHLH037	HECATE 2, basic helix-loop-hel...		Lus10042647 [exp]	7.4	0.8610
AT5G38650			Proteasome maturation factor U...		Lus10005377 [exp]	10.7	0.8499
AT1G75240	ZF_HD	ATHB33, ZHD5	zinc-finger homeodomain 5, hom...		Lus10031885 [exp]	12.6	0.8525
AT1G05010		ACO4, EAT1, EFE	ethylene forming enzyme, ethyl...		Lus10015153 [exp]	21.5	0.8439
					Lus10031884 [exp]	22.4	0.8362
AT5G23730		EFO2, RUP2	REPRESSOR OF UV-B PHOTOMORPHOG...		Lus10027454 [exp]	27.0	0.7904
AT1G75240	ZF_HD	ATHB33, ZHD5	zinc-finger homeodomain 5, hom...		Lus10031315 [exp]	27.2	0.8417
AT5G11420			Protein of unknown function, D...		Lus10035910 [exp]	28.4	0.8387
AT1G70560		CKRC1, WEI8, TA...	WEAK ETHYLENE INSENSITIVE 8, S...		Lus10036846 [exp]	29.2	0.8119
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10014731 [exp]	31.2	0.8112

Compare expression of checked genes

Lus10008654 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.