Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08315 345 / 3e-119 ARM repeat superfamily protein (.1) AT2G23140 102 / 8e-24 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT3G54850 99 / 9e-23 ATPUB14 plant U-box 14 (.1) AT1G71020 94 / 2e-21 ARM repeat superfamily protein (.1.2) AT5G67340 94 / 3e-21 ARM repeat superfamily protein (.1) AT1G23030 94 / 5e-21 PUB11 ARM repeat superfamily protein (.1) AT3G46510 79 / 3e-16 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT5G42340 76 / 3e-15 PUB15 Plant U-Box 15 (.1) AT3G54790 76 / 3e-15 ARM repeat superfamily protein (.1.2) AT1G29340 74 / 2e-14 ATPUB17, PUB17 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024145 [exp] 443 / 1e-157 AT1G08315 390 / 2e-136 ARM repeat superfamily protein (.1) Lus10039500 [exp] 443 / 3e-153 AT1G08315 383 / 2e-129 ARM repeat superfamily protein (.1) Lus10026170 [exp] 184 / 8e-59 AT1G08315 106 / 6e-29 ARM repeat superfamily protein (.1) Lus10006007 [exp] 147 / 2e-43 AT1G08315 111 / 8e-30 ARM repeat superfamily protein (.1) Lus10017444 [exp] 112 / 2e-27 AT3G46510 381 / 2e-123 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10007511 [exp] 110 / 9e-27 AT3G46510 397 / 2e-129 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10024899 [exp] 102 / 5e-24 AT2G23140 551 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10037970 [exp] 100 / 2e-23 AT3G54850 803 / 0.0 plant U-box 14 (.1) Lus10022919 [exp] 100 / 3e-23 AT2G23140 549 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G195400 [exp] 379 / 2e-132 AT1G08315 364 / 1e-126 ARM repeat superfamily protein (.1) Potri.001G028300 [exp] 377 / 9e-132 AT1G08315 343 / 3e-118 ARM repeat superfamily protein (.1) Potri.008G035700 [exp] 116 / 8e-29 AT3G54850 821 / 0.0 plant U-box 14 (.1) Potri.010G185900 [exp] 103 / 3e-24 AT3G46510 335 / 2e-105 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.010G226500 [exp] 102 / 4e-24 AT3G54850 806 / 0.0 plant U-box 14 (.1) Potri.008G071600 [exp] 99 / 1e-22 AT3G46510 345 / 2e-109 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.005G144700 [exp] 99 / 1e-22 AT2G23140 972 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.007G051000 [exp] 97 / 3e-22 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.001G238500 [exp] 97 / 4e-22 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.002G037700 [exp] 96 / 1e-21 AT3G54790 707 / 0.0 ARM repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Lus10008655 pacid=23161962 polypeptide=Lus10008655 locus=Lus10008655.g ID=Lus10008655.BGIv1.0 annot-version=v1.0 ATGGATGTGAAGCGCAGAGCCATACGAACTCTGGTCTCCAAGCTGGGGTCGGTCTCTGAGCGGACCCGGGAGGAAGCCTTATCGGAGCTCCGACTTATCA CGAAGCACGACGGCGAGAGCCGCTCGATCGTAGCAGAAGCCGGAGCGATCCCTTACTTGGCGGAGACTCTCTACTCTTCCTCCCACGACTCTCAGGAGAA CGCCGCCGCCACGCTCCTCAACATCTCCATCTCTTCTCGGGAGCCCCTGATGTCCACGCGCGGCTTGCTCGACGCCCTCTCCCACGCGCTCAGCCACCAC GCTACCTCCACTTCTCCCGCCGCGGTGCAGTCAGCCGCCGCCACGCTCTACAGCCTGCTCATCGTCGACGGAGAATCCTACCGTCCGATCATAGGAGCGA AGCGGGATATTGTCTACTCGTTGATCGAGATCATTAGGAGTCCTAAATCGCCGATGCGGTCGATTAAGGACGCCCTGATGGCTTTGTTCGGGATCTCGTT GTACCAGCTGAACCGATCCACCATGATCGATCTCGGAGCGGTGGCTCCGTTATTTTCCTTGGTGGTGAAGGACGGGAGGGTTGGGATTGTGGAGGATGCC ACGGCGGTGATCGCTCAGATCGCCGGATGCGAGGAGAGCGAAGCGGAATTTCGAAGAGTCTCAGGAATCAGGGTTTTGGTGGATTTGTTGGATTCCGGGA CGGGATCCAGCGATCGAATTAAGGAGAACGCCGTCGGAGCGTTGCTGAACCTGGCGAGGACCGGCGGGGAGGAGGTGAAAGGGGAAGTGAAGGAATTGGG AGCTACGGTGGTGGAAGGAATCAGGGATGTAGCGGAGGCAGGGAGCTCTAAAGGGAAGAATAAAGCTATGGCGTTGCTGGTACTGATCGAAGGCGGATCC ATGAACGGGAACGAGAAGTTCTATTACTCTTCGTGA
AA sequence Show only first row Show all	>Lus10008655 pacid=23161962 polypeptide=Lus10008655 locus=Lus10008655.g ID=Lus10008655.BGIv1.0 annot-version=v1.0 MDVKRRAIRTLVSKLGSVSERTREEALSELRLITKHDGESRSIVAEAGAIPYLAETLYSSSHDSQENAAATLLNISISSREPLMSTRGLLDALSHALSHH ATSTSPAAVQSAAATLYSLLIVDGESYRPIIGAKRDIVYSLIEIIRSPKSPMRSIKDALMALFGISLYQLNRSTMIDLGAVAPLFSLVVKDGRVGIVEDA TAVIAQIAGCEESEAEFRRVSGIRVLVDLLDSGTGSSDRIKENAVGALLNLARTGGEEVKGEVKELGATVVEGIRDVAEAGSSKGKNKAMALLVLIEGGS MNGNEKFYYSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08315			ARM repeat superfamily protein...		Lus10008655 [exp]	0	1
AT1G13360			unknown protein		Lus10034310 [exp]	1.7	0.8736
AT4G29120			6-phosphogluconate dehydrogena...		Lus10034974 [exp]	3.2	0.8669
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10002853 [exp]	8.5	0.8422
AT3G63000		NPL41	NPL4-like protein 1 (.1)		Lus10017163 [exp]	8.8	0.8590
AT4G31330			Protein of unknown function, D...		Lus10026976 [exp]	12.8	0.7514
AT5G42050			DCD (Development and Cell Deat...		Lus10023059 [exp]	13.0	0.8283
AT4G21350		PUB8, B80	plant U-box 8 (.1)		Lus10006747 [exp]	13.4	0.8217
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10040783 [exp]	13.9	0.8242
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Lus10014074 [exp]	16.0	0.8375
AT3G15210	AP2_ERF	ATERF4, RAP2.5...	RELATED TO AP2 5, ethylene res...		Lus10033664 [exp]	16.1	0.8302

Compare expression of checked genes

Lus10008655 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.