Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05200 44 / 1e-05 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G21230 39 / 0.0005 CRK27 cysteine-rich RLK (RECEPTOR-like protein kinase) 27 (.1) AT3G21940 38 / 0.001 Receptor protein kinase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026169 [exp] 161 / 5e-52 AT4G05200 51 / 4e-08 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10026168 [exp] 80 / 2e-19 ND 37 / 0.005 Lus10026629 [exp] 50 / 6e-08 AT4G23180 540 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10028026 [exp] 46 / 6e-07 AT4G23290 44 / 1e-05 cysteine-rich RLK (RECEPTOR-like protein kinase) 21 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 21 (.2) Lus10020834 [exp] 45 / 1e-06 AT1G70520 46 / 3e-06 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10018379 [exp] 45 / 4e-06 AT4G23180 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10014362 [exp] 44 / 6e-06 AT5G48540 39 / 6e-04 receptor-like protein kinase-related family protein (.1) Lus10020833 [exp] 42 / 2e-05 AT4G23260 47 / 1e-06 cysteine-rich RLK (RECEPTOR-like protein kinase) 18 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 18 (.2) Lus10008657 [exp] 57 / 5e-05 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G208400 [exp] 53 / 1e-09 AT5G48540 52 / 1e-08 receptor-like protein kinase-related family protein (.1) Potri.004G026350 [exp] 47 / 5e-07 AT4G21410 610 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G027900 [exp] 45 / 5e-06 AT4G23180 542 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G028100 [exp] 44 / 9e-06 AT4G05200 519 / 8e-177 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G025900 [exp] 42 / 3e-05 AT4G23130 573 / 0.0 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) Potri.004G024900 [exp] 42 / 3e-05 AT4G23180 506 / 1e-171 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025200 [exp] 42 / 6e-05 AT4G23180 665 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G023788 [exp] 42 / 6e-05 AT4G23180 559 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024052 [exp] 42 / 7e-05 AT4G23180 545 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025001 [exp] 41 / 9e-05 AT4G05200 465 / 4e-158 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10008656 pacid=23161956 polypeptide=Lus10008656 locus=Lus10008656.g ID=Lus10008656.BGIv1.0 annot-version=v1.0 ATGCCTAATTTCATCTCTGCTACGGTCATACCAAGAGGAATCAGCTGGACGACGGTCGTTTTGTGCCAACCCGCGGGCATAGGAGTTCCAGTCTGCAACA GCAGGAAGATACACGACGGGGACCCGTTCGCCGGAGCATTGGTGGATGTCCTGAGGACGATATGGATCCACGTGGACGTGCTGGTAAAATATCCTTCTGC TCAACACTGCTACGACGGTCATGATACGTATCAGCTTACCACTGCGTACGGTTCGGCGTCTTGTTCCGTCGGGCTTACCAATAAAGATTGCTCGGCGAGC TTGTACGACGCATTGACTATAATTGATACTGCTTGTGGGAGGACTTACGGGGCTCAAGTCACCACTTCCACCTGTTTCTTGAGGTTCGAGTCTTATTCTT TCTGCTAG
AA sequence Show only first row Show all	>Lus10008656 pacid=23161956 polypeptide=Lus10008656 locus=Lus10008656.g ID=Lus10008656.BGIv1.0 annot-version=v1.0 MPNFISATVIPRGISWTTVVLCQPAGIGVPVCNSRKIHDGDPFAGALVDVLRTIWIHVDVLVKYPSAQHCYDGHDTYQLTTAYGSASCSVGLTNKDCSAS LYDALTIIDTACGRTYGAQVTTSTCFLRFESYSFC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10008656 [exp]	0	1
AT5G53820			Late embryogenesis abundant pr...		Lus10007566 [exp]	5.2	0.7997
AT5G47670	CCAAT	NF-YB6, L1L	"nuclear factor Y, subunit B6"...		Lus10008978 [exp]	7.3	0.7997
AT4G35160			O-methyltransferase family pro...		Lus10032304 [exp]	8.0	0.7241
AT4G35260		IDH-I, IDH1	isocitrate dehydrogenase I, is...		Lus10014436 [exp]	9.0	0.7997
AT1G28300	B3	LEC2	LEAFY COTYLEDON 2, AP2/B3-like...		Lus10015428 [exp]	10.4	0.7997
					Lus10033071 [exp]	11.6	0.7997
					Lus10003695 [exp]	12.7	0.7997
					Lus10003774 [exp]	13.7	0.7997
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10005596 [exp]	14.7	0.7997
AT3G55700			UDP-Glycosyltransferase superf...		Lus10040724 [exp]	15.6	0.7997

Compare expression of checked genes

Lus10008656 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.