Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12250 459 / 2e-163 bZIP BZIP45, TGA6 TGACG motif-binding factor 6 (.1.2.3.4.5) AT5G06950 453 / 2e-161 bZIP TGA2, AHBP-1B bZIP transcription factor family protein (.1.2.3.4) AT5G06960 435 / 6e-154 bZIP TGA5, OBF5 TGACG MOTIF-BINDING FACTOR 5, OCS-element binding factor 5 (.1.2) AT1G68640 370 / 1e-126 bZIP PAN PERIANTHIA, bZIP transcription factor family protein (.1) AT1G08320 335 / 2e-114 bZIP TGA9, bZIP21 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) AT5G06839 332 / 2e-112 bZIP TGA10, bZIP65 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) AT5G10030 315 / 3e-106 bZIP OBF4, TGA4 OCS ELEMENT BINDING FACTOR 4, TGACG motif-binding factor 4 (.1.2) AT1G22070 308 / 2e-103 bZIP TGA3 TGA1A-related gene 3 (.1) AT5G65210 304 / 4e-103 bZIP TGA1 bZIP transcription factor family protein (.1.2.3.4.5.6) AT1G77920 298 / 1e-99 bZIP bZIP transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026166 [exp] 568 / 0 AT3G12250 514 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10024140 [exp] 533 / 0 AT3G12250 532 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10041475 [exp] 362 / 5e-123 AT1G68640 444 / 4e-153 PERIANTHIA, bZIP transcription factor family protein (.1) Lus10004876 [exp] 348 / 9e-117 AT1G08320 635 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Lus10020610 [exp] 343 / 6e-115 AT1G08320 633 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Lus10034296 [exp] 341 / 6e-115 AT1G68640 427 / 1e-146 PERIANTHIA, bZIP transcription factor family protein (.1) Lus10023822 [exp] 341 / 1e-114 AT5G06839 491 / 2e-171 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Lus10043387 [exp] 322 / 1e-107 AT1G08320 481 / 7e-168 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Lus10019543 [exp] 316 / 3e-105 AT1G08320 508 / 5e-178 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G194600 [exp] 521 / 0 AT3G12250 462 / 3e-162 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.001G029800 [exp] 517 / 0 AT3G12250 423 / 4e-147 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.006G039000 [exp] 482 / 1e-170 AT5G06950 413 / 3e-143 bZIP transcription factor family protein (.1.2.3.4) Potri.016G036500 [exp] 476 / 3e-168 AT5G06950 410 / 2e-142 bZIP transcription factor family protein (.1.2.3.4) Potri.008G118300 [exp] 415 / 2e-144 AT1G68640 456 / 8e-159 PERIANTHIA, bZIP transcription factor family protein (.1) Potri.006G058800 [exp] 364 / 2e-123 AT5G06839 540 / 0.0 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Potri.016G049200 [exp] 346 / 1e-116 AT5G06839 551 / 0.0 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Potri.004G203400 [exp] 345 / 4e-116 AT1G08320 571 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Potri.009G164300 [exp] 341 / 1e-114 AT1G08320 574 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Potri.005G170500 [exp] 317 / 6e-107 AT1G77920 468 / 5e-166 bZIP transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10008658 pacid=23161949 polypeptide=Lus10008658 locus=Lus10008658.g ID=Lus10008658.BGIv1.0 annot-version=v1.0 ATGACTGATGCCAGTCCTAGGACAGACTCAGGAGATGAATCAGACGAGAAAAGTCAGAGGATTGATAGAGGTCTATCAGTATATGTCGGTGCTTCTGATT CCAGTGACAGATCGAAAGATAAAATGGATCAAAAGACACTGCGTAGACTTGCTCAAAATAGAGAAGCTGCAAGAAAAAGCCGGCTTAGGAAGAAAGCGTA TGTACAACAGCTAGAGAGTAGCCGGTTGAAGCTGACATCACTAGAGCAGGAGCTTCAACGAGCCCGTCAACAGGGGGTCTTTATTTCAAGCTCAGGGGAC CAAGCCCATTCAATGGGCGGAAACGGTGCCATGGCATTCGATGTAGAGTACGCAAGATGGGTAGAAGAGCAAAACCGACAAATAAACGAGTTGCGAGCAG CAGTAAACTCTCATGCAGGAGATACAGAACTTCGCATTATCATCGATGGTGTAATGACTCACTATGATGAAGTTTTTAGGCTGAAGAGCAATGCTGCCAA GGCTGATGTTTTCCATTTGCTATCCGGCATGTGGAAGACACCTGCCGAGAGGTGTTTCCTGTGGCTTGGTGGCTTCCGATCATCCGAACTTCTCAAGCTT TTGATGAATCAGTTGGAGCCTTTGACGGAGCAGCAGCTGGCAGGCATTACCAACCTGCAGCAATCATCCCAACAGGCAGAAGATGCACTGTCTCAAGGAA TGGAGGCCTTGCAGCAGTCGTTGGCCGAAACATTGTCCAGTGGTTCCCCGGGATCCACGGGCTCATCTGGAAATGTGGCGAACTATATGGGTCAGATGGC CATGGCGATGGGAAAGCTTGGCACCCTCGAGGGGTTTATTCGCCAGGCTGACAACTTGCGACAACAGACGCTACAACAGATGCACAGAATATTAACTACC CGGCAGTCGGCCAGAGCGTTGCTGGCGATCCATGATTACTTCTCGCGATTGCGAGCTCTTAGTTCGCTTTGGCTCGCCAGACCAAGAGAGTGA
AA sequence Show only first row Show all	>Lus10008658 pacid=23161949 polypeptide=Lus10008658 locus=Lus10008658.g ID=Lus10008658.BGIv1.0 annot-version=v1.0 MTDASPRTDSGDESDEKSQRIDRGLSVYVGASDSSDRSKDKMDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTSLEQELQRARQQGVFISSSGD QAHSMGGNGAMAFDVEYARWVEEQNRQINELRAAVNSHAGDTELRIIIDGVMTHYDEVFRLKSNAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKL LMNQLEPLTEQQLAGITNLQQSSQQAEDALSQGMEALQQSLAETLSSGSPGSTGSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTT RQSARALLAIHDYFSRLRALSSLWLARPRE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Lus10008658 [exp]	0	1
AT1G27980		DPL1, ATDPL1	dihydrosphingosine phosphate l...		Lus10003129 [exp]	1.4	0.9294
AT2G34930			disease resistance family prot...		Lus10021973 [exp]	3.9	0.9034
AT5G61500		ATATG3	autophagy 3 (APG3) (.1)		Lus10009026 [exp]	10.4	0.9013
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Lus10036196 [exp]	12.7	0.8883
AT2G32210			unknown protein		Lus10003815 [exp]	14.6	0.9095
AT5G55860			Plant protein of unknown funct...		Lus10016626 [exp]	15.5	0.9039
AT5G49710			unknown protein		Lus10015965 [exp]	20.1	0.9113
AT1G27170			transmembrane receptors;ATP bi...		Lus10026011 [exp]	23.0	0.8947
AT2G44140			Peptidase family C54 protein (...		Lus10025609 [exp]	23.4	0.8981
AT5G26240		ATCLC-D, CLC-D	chloride channel D (.1)		Lus10010531 [exp]	26.6	0.8737

Compare expression of checked genes

Lus10008658 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.