Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12600 209 / 4e-69 ATNUDT16 nudix hydrolase homolog 16 (.1.2) AT3G26690 142 / 2e-42 ATNUDX13, ATNUDT13 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13, nudix hydrolase homolog 13 (.1.2) AT1G12880 136 / 3e-40 ATNUDT12 nudix hydrolase homolog 12 (.1) AT1G14860 117 / 4e-33 ATNUDT18 nudix hydrolase homolog 18 (.1) AT1G18300 117 / 7e-33 ATNUDT4 nudix hydrolase homolog 4 (.1) AT2G01670 116 / 1e-32 ATNUDT17 nudix hydrolase homolog 17 (.1) AT1G73540 107 / 7e-29 ATNUDT21 nudix hydrolase homolog 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026164 [exp] 317 / 8e-112 AT3G12600 221 / 1e-74 nudix hydrolase homolog 16 (.1.2) Lus10024137 [exp] 239 / 5e-81 AT3G12600 211 / 1e-70 nudix hydrolase homolog 16 (.1.2) Lus10001598 [exp] 116 / 2e-32 AT1G14860 252 / 1e-86 nudix hydrolase homolog 18 (.1) Lus10034598 [exp] 113 / 2e-31 AT1G14860 248 / 5e-85 nudix hydrolase homolog 18 (.1) Lus10021780 [exp] 112 / 5e-31 AT1G14860 244 / 2e-83 nudix hydrolase homolog 18 (.1) Lus10003713 [exp] 95 / 5e-24 AT1G14860 213 / 8e-71 nudix hydrolase homolog 18 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G194900 [exp] 244 / 4e-83 AT3G12600 226 / 2e-76 nudix hydrolase homolog 16 (.1.2) Potri.001G029500 [exp] 237 / 2e-80 AT3G12600 219 / 5e-74 nudix hydrolase homolog 16 (.1.2) Potri.016G036700 [exp] 149 / 6e-46 AT3G12600 159 / 8e-51 nudix hydrolase homolog 16 (.1.2) Potri.001G069200 [exp] 142 / 4e-43 AT1G12880 219 / 2e-73 nudix hydrolase homolog 12 (.1) Potri.003G161100 [exp] 143 / 8e-43 AT1G12880 213 / 4e-70 nudix hydrolase homolog 12 (.1) Potri.012G044300 [exp] 131 / 3e-38 AT1G18300 199 / 5e-65 nudix hydrolase homolog 4 (.1) Potri.015G035000 [exp] 133 / 4e-38 AT1G18300 195 / 2e-62 nudix hydrolase homolog 4 (.1) Potri.004G085600 [exp] 124 / 2e-35 AT1G14860 206 / 2e-68 nudix hydrolase homolog 18 (.1) Potri.017G131000 [exp] 123 / 4e-35 AT2G01670 223 / 6e-75 nudix hydrolase homolog 17 (.1) Potri.010G107300 [exp] 113 / 2e-31 AT2G01670 223 / 2e-75 nudix hydrolase homolog 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [flax] [poplar] NUDIX PF00293 [flax] [poplar] NUDIX NUDIX domain
Representative CDS sequence Show only first row Show all	>Lus10008660 pacid=23161938 polypeptide=Lus10008660 locus=Lus10008660.g ID=Lus10008660.BGIv1.0 annot-version=v1.0 ATGGCTGACCAAGGCTCGAGGAAATTGACCTCTTCGTGCATCAGCATTGTCGGGTTTTCTTCGTCCCCACAATGCAGTAATAGGGTCCTCTTCCGATCAG CTATGTCTGAGCTGGTTGCCCGCACTGGTCGACATCAGCAACGCTACGAGGGCGGCTGTCGCCTTGTCGCTGGGTGTATTCCATTTAGGTATAGAGAATG TGATGAGAATGAAGATAATAATTTCGAGAAGGTCGTTGAAGTTCTTATGATCAACTCCACCAGTGGGCCTGGTCTGCTATTCCCAAAGGGCGGGTGGGAG AATGACGAAACGGTCAAAGAGGCTGCTGTAAGGGAAGCTGTAGAAGAGGCTGGAGTTCGAGGTGATCTATTGGATTATATAGGCGATTATGACTTTAAAA GCAAAACCCTGCAAGATGAGAGTTGTCCAGAAGGGCTGTGTAAAGCTGCAATGTTTGCCTTGCTTGTGAAAGAAGAGCTTGAGTCATGGCCAGAGCAAAA CACTAGGACAAGGAGCTGGCTAGCCATTTCTGAAGCAGTTGAGAGTTGCCGCCATAAGTGGATGGAAGATGCTTTGAAGCATTTTGCTATACTGGTTCAA GAGAAAGGCTTTGGTGGTGATGAATTGGCTAGAAGATGA
AA sequence Show only first row Show all	>Lus10008660 pacid=23161938 polypeptide=Lus10008660 locus=Lus10008660.g ID=Lus10008660.BGIv1.0 annot-version=v1.0 MADQGSRKLTSSCISIVGFSSSPQCSNRVLFRSAMSELVARTGRHQQRYEGGCRLVAGCIPFRYRECDENEDNNFEKVVEVLMINSTSGPGLLFPKGGWE NDETVKEAAVREAVEEAGVRGDLLDYIGDYDFKSKTLQDESCPEGLCKAAMFALLVKEELESWPEQNTRTRSWLAISEAVESCRHKWMEDALKHFAILVQ EKGFGGDELARR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12600		ATNUDT16	nudix hydrolase homolog 16 (.1...		Lus10008660 [exp]	0	1
AT4G00290			Mechanosensitive ion channel p...		Lus10018822 [exp]	8.9	0.7492
AT3G55005		TON1B	tonneau 1b (TON1b) (.1)		Lus10030297 [exp]	23.9	0.7345
AT2G39170			unknown protein		Lus10017465 [exp]	31.3	0.7138
AT2G34520		RPS14	mitochondrial ribosomal protei...		Lus10017877 [exp]	35.2	0.7168
AT5G11390		WIT1	WPP domain-interacting protein...		Lus10034351 [exp]	35.4	0.6093
AT2G19080			metaxin-related (.1)		Lus10015535 [exp]	40.8	0.6837
AT2G38660			Amino acid dehydrogenase famil...		Lus10043398 [exp]	49.8	0.6834
AT1G18640		PSP	3-phosphoserine phosphatase (....		Lus10034686 [exp]	57.1	0.6967
AT3G25680			unknown protein		Lus10021714 [exp]	69.5	0.6798
AT5G14800		EMB2772, AT-P5C...	EMBRYO DEFECTIVE 2772, pyrroli...		Lus10019103 [exp]	83.1	0.6334

Compare expression of checked genes

Lus10008660 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.