Plant FIBer expression Database

Lus10008661 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G12260 107 / 1e-29 LYR family of Fe/S cluster biogenesis protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026163
[exp]
158 / 2e-49 AT3G12260 200 / 2e-67 LYR family of Fe/S cluster biogenesis protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G029900
[exp]
103 / 4e-28 AT3G12260 177 / 2e-58 LYR family of Fe/S cluster biogenesis protein (.1)
PFAM info
Representative CDS sequence
>Lus10008661 pacid=23161930 polypeptide=Lus10008661 locus=Lus10008661.g ID=Lus10008661.BGIv1.0 annot-version=v1.0
ATGGAGAGGGCAGCAGCAGCATCGTTGAAGTTCGTGAAAGTGCCGCCGAACTCCGCCAGCATGGAGGAAGCGAGGGCTAGGGTTTTCGAATTCTTCAAAA
CCGCCTGCAGATCCGTCCCCACAATCATGGACATCTACAATCTCCAGGACGTCGTCAAGGAGTCTCAGCTCCGTTCCTCCGTCGCCTCCGAGATCCGCAG
GCACGCTCACATCACTGACCCCAAGTTGTCTGAGAGAATACTTAATCCAATTCGTTTCATGAGTTGCAAGGGCGGTGTTCTTTTGTACTGTAAGTTTTTG
GAAATGAGTATAAAAAGCATAATGAAGTGTAGGTTGGTTCTCCTTTCTATTCACTTCTTTCTAATTCACTTCTTTCTAGTTGGCCTTTCTGTTTATTGTT
GGCTAAGTGATCCTCTGTACTTGAACTTAACTTCATCTGAATTACTTATGTTGGGTTGCTCGTGGATTTATACAAATGGAAGCACAAAAATGCTTGCTGA
AATCCCTGTGTCTGTGATTGATATGCTGCTGTTGAAGGGGACGGAAGAGTTGAGCAACGTTGTGCAGCACTCGAAGCAGCGGCACCACATTATCGGGCAG
TACGTAGTGGGGAAACAAGGACTTGTGCAGGATCTGGGAACCAAGGATGAAGGAGCCTCCGATTTCCTCAAGAACTTCTACAAAACCAACTACTTCTGA
AA sequence
>Lus10008661 pacid=23161930 polypeptide=Lus10008661 locus=Lus10008661.g ID=Lus10008661.BGIv1.0 annot-version=v1.0
MERAAAASLKFVKVPPNSASMEEARARVFEFFKTACRSVPTIMDIYNLQDVVKESQLRSSVASEIRRHAHITDPKLSERILNPIRFMSCKGGVLLYCKFL
EMSIKSIMKCRLVLLSIHFFLIHFFLVGLSVYCWLSDPLYLNLTSSELLMLGCSWIYTNGSTKMLAEIPVSVIDMLLLKGTEELSNVVQHSKQRHHIIGQ
YVVGKQGLVQDLGTKDEGASDFLKNFYKTNYF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G12260 LYR family of Fe/S cluster bio... Lus10008661
[exp]
0 1
AT5G41685 Mitochondrial outer membrane t... Lus10004754
[exp]
2.0 0.7498
AT2G37660 NAD(P)-binding Rossmann-fold s... Lus10024383
[exp]
7.5 0.7237
AT3G18110 EMB1270 embryo defective 1270, Pentatr... Lus10013785
[exp]
15.5 0.6993
AT1G28150 unknown protein Lus10030561
[exp]
16.1 0.7273
AT3G03100 NADH:ubiquinone oxidoreductase... Lus10007886
[exp]
16.9 0.6992
AT5G42300 UBL5 ubiquitin-like protein 5 (.1) Lus10019939
[exp]
17.3 0.6536
AT5G54855 Pollen Ole e 1 allergen and ex... Lus10003874
[exp]
27.3 0.6629
AT5G49550 BLOS2 BLOC subunit 2, unknown protei... Lus10019163
[exp]
28.8 0.6948
AT5G01650 Tautomerase/MIF superfamily pr... Lus10022681
[exp]
33.8 0.7063
AT3G13845 unknown protein Lus10015617
[exp]
39.1 0.6846

Lus10008661 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.