Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06970 1347 / 0 Protein of unknown function (DUF810) (.1) AT2G20010 375 / 6e-113 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) AT2G25800 363 / 4e-108 Protein of unknown function (DUF810) (.1) AT4G11670 352 / 6e-103 Protein of unknown function (DUF810) (.1) AT2G33420 347 / 7e-102 Protein of unknown function (DUF810) (.1) AT1G04470 345 / 5e-101 Protein of unknown function (DUF810) (.1) AT1G65000 139 / 1e-38 unknown protein AT5G38060 45 / 5e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026160 [exp] 1859 / 0 AT5G06970 1507 / 0.0 Protein of unknown function (DUF810) (.1) Lus10029581 [exp] 430 / 9e-131 AT4G11670 957 / 0.0 Protein of unknown function (DUF810) (.1) Lus10006312 [exp] 403 / 1e-122 AT4G11670 740 / 0.0 Protein of unknown function (DUF810) (.1) Lus10034947 [exp] 396 / 4e-120 AT2G20010 1236 / 0.0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) Lus10023742 [exp] 343 / 3e-100 AT2G33420 1426 / 0.0 Protein of unknown function (DUF810) (.1) Lus10011785 [exp] 311 / 3e-90 AT2G33420 1256 / 0.0 Protein of unknown function (DUF810) (.1) Lus10008430 [exp] 203 / 1e-56 AT2G25800 587 / 0.0 Protein of unknown function (DUF810) (.1) Lus10008431 [exp] 204 / 3e-56 AT2G25800 860 / 0.0 Protein of unknown function (DUF810) (.1) Lus10013392 [exp] 198 / 7e-55 AT2G25800 589 / 0.0 Protein of unknown function (DUF810) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G030100 [exp] 1513 / 0 AT5G06970 1437 / 0.0 Protein of unknown function (DUF810) (.1) Potri.001G108400 [exp] 494 / 5e-155 AT4G11670 1097 / 0.0 Protein of unknown function (DUF810) (.1) Potri.006G238200 [exp] 404 / 9e-123 AT2G25800 1446 / 0.0 Protein of unknown function (DUF810) (.1) Potri.018G044200 [exp] 397 / 2e-120 AT2G25800 1442 / 0.0 Protein of unknown function (DUF810) (.1) Potri.010G068000 [exp] 365 / 2e-108 AT2G33420 1437 / 0.0 Protein of unknown function (DUF810) (.1) Potri.018G085900 [exp] 350 / 1e-103 AT2G20010 1166 / 0.0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) Potri.008G170200 [exp] 337 / 3e-98 AT2G33420 1382 / 0.0 Protein of unknown function (DUF810) (.1) Potri.013G078866 [exp] 133 / 2e-36 AT1G65000 118 / 2e-36 unknown protein Potri.017G122500 [exp] 48 / 4e-06 AT5G38060 162 / 2e-52 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05664 [flax] [poplar] UNC_13_homolog Unc-13 homolog
Representative CDS sequence Show only first row Show all	>Lus10008663 pacid=23161980 polypeptide=Lus10008663 locus=Lus10008663.g ID=Lus10008663.BGIv1.0 annot-version=v1.0 ATGGAGAAACAAGGACGAATAATCGAGGAAGAGAAAGTATGCCGGCGATGCAAGCAGAGCTTCACTCGCTCTTCCAATAGCTCCTCCGCCTGCCGCTTCC ACCCTTCCTTCTTCGTCTGCCGTCGCCACGACGATCAGAAAAGGTATTATGAGCTAGGGCCGAACGATCCACCGTATGCTGCAAAATTCTACGACTGTTG CGGGGCTGAGCAGCCTGAAGCACCGGGATCTTCAACACAGTTTCTCATTTCTCTCTACTCAAGTCACCGCATTGACTATAATCCTCTGTTTCTCTGCCGC TTCTCAACTCCCAAGGTTGGAGACCTTGTCATCAAAGAGTTGAAGCTCACTTGGCATTCTGAGCTATTCATTATGGAAGATGAAAATGCGGTCGAGCTTC TACAAAGGTACAGGCGGGACAGGCGTATACTTATGGACTTTATACTTTCTGGAAGCTTGATTAAGAAAGTTGTTATGCCTCCTGGGGCTGTTACGCTGGA TGATGTGGATCTTGATCAAGTTAGTGTAGATTATGTTCTCAATTGTGCCAAAAAAGGCGGCATGCTTGAACTCTCTGAAGCTATAAGAGATTACCATGAT AGCACTGGCATGCCCCAGATGAATAGTACGAGTTCAGCAGATGAATTTTTCTTGGTTACCGATCCTGCATTTTCTGGTTCACCTCCTAGAAGAGCACCAC CACCTATCCCAGTTTCCGCACCTGTTCCTATAGCAACGGCTGCTCCGGTTTTTGCACCTCCGCTGGATGAATCGCTTTCAAGTGTGGCAAAGTCTGAGTC CTTTAATTCTGTGGAAGAACGTGAACTGACTGTGGATGACATTGAGGATTTTGAGGATGATGATCTCGGCACAGAGGAATTGGCCAGTGCCAGGGTTGTA AGGCGCAGTCAAAATGATGCTTCTGATCTTGCCCCCAAATTGCCAACTTTTGCAACAGGCATCACTGATGATGACCTCCGTGAAACTGCATATGAAATCC TCTTGGCTTGCGCTGGAGCTTCTGGAGGCCTCATAGTTCCTTCAAAGGAGAAGAAGAAAGACAAGAAGTCCAGCTTGATGAGGAAACTTGGACGCAGTAA AACTCAGAGTCTTGCAAGTCAGTCTGACCGTGCACCTGGAATGGTTGGTTTGTTGGAAACTATGCGCGCTCAGATGGAGATATCTGAGTCAATGGATATC AGAACAAGAAAGGGGCTGCTGAATGCTCTTGCCGGGAAAGTCGGGAAAAGAATGGATACGCTGTTGATACCCTTGGAACTCTTATGCTGTATTTCCCGTA CAGAATTTTCTGACAAGAAAGCTTATATACGGTGGCAAAAAAGGCAGCTATTCATCCTAGAAGAGGGCCTTATCAATCATCCAGTCGTGGGATTCGGTGA ATCTGGGCGCAAGGGAAGTGAGTTGAGGATTCTTCTGGCAAAAATTGAAGAGTCTGAGTTTCGTGAATCTTCTGCGGGTGAAGTGCAACGAACTGAATGC TTGCGATCTCTCAGAGAGATTGCCACTCAACTTGCCGAGAGACCTGCACGAGGAGACTTAACTGGGGAAGTTTGCCATTGGGCCGATGGTTATCACCTTA ACGTTAAATTATATGAGAAGCTCCTTCTCAGTATGTTTGACATTTTAGACGAGGGGAAGCTGACAGAGGAAGTGGAGGAAATACTTGAGCTCTTTAAGTC AACATGGCGTGTCTTGGGAATTACAGAGACCATACACTACACTTGCTACACCTGGGTTTTATTCCGTCAGTTCGTCATCACTCGAGAGCTCGGAGTCCTG CACCATGCCATTGAGCAACTCAACAGAATACCATTGAGGGAACAACGGGGTCCACAGGAAAGGTTACATTTGAAAACTTTAAGTTCCAGAGCTGATGGGG AAGAGTTTTCCTTCTTGCATTCATTTTTGCTACCCATTCAGAAGTGGGCAGATAAGCAGCTAGGGGACTACCATCTGCACTTCACTGAGGAGCCAGCGGT AATGGAAGGTATTCTTCAAGTTGCAATTGTTACTCGGAGGCTTCTAGTTGAAGAGTCTGAAACTGGTACACTTTCTAAGTCTGCCATGGATAGAGATCAG ATTGAATCATACATATCATCATCCATTAAGATGGCATTTACAAGGACACTGCAGGTTGTTGACAGGTCAGACGACCATTCTCTAGCGTTACTTGCAGAAG AGACCAAAAAACTTTTAAAAAAGGAAGCAAGTATATTCACACCAATTTTATCTCAGAGGCATCCTCAAGCACTTGTTATCTCAGCATCACTTCTTCACAG GCTTTACGGGATCAAGTTGAAACCATTCCTCGATGGTGCTGAGCATTTGACGGAAGATGTCGTTTCTGTGTTTCCTGTTGCTGATAGTCTCGAGCAATTT ATAATGTCACTCATTTCTAATGCCTGTGGAGGCACTGCAGAAGTCAATTTGAAGAAATTAAATTCATATCAGGTGGAATCTGTGTCTGGAACACTGGTGA TGAGATGGGTCAATTCACAGCTTGGAAGACTTCTAGGATGGGTCGATCGTGCCTTGCAACAAGAGCGATGGGAACCAATATCCCCCCAACAACGGCATGG AAGTTCAATTGTTGAAGTATACAGGATCGTGGAAGAGACAGTGGATCAATTCTTCGCTCTTAAGGTTCCTATGAGGTCATCAGAGCTGAATAGTATGTTT CGATGTGTAGACAATGCCTTTCAAGTCTATGCCAAACATGTGACTGACAAGTTGGAGAGCAAAGAAGATTTGATTCCTCCAGTTCCTGTTCTTACGAGAT ATCGGAAGGAAGCTGGAATAAAGGCTTTTGTGAAAAAGGAGCTATTTGAACATAAGTTGCCTGAAGAGATGACAAAATCACGTGCTATTGATGTCCAAAC TACTCCAATCCTTTGCGTTCAGTTGAATACATTATTTTATGCAATCAGCCAGCTGAATAAGCTGGAAGACAGCATTTGGAGTCGGTGGGCAGCCAAGAAG CCTCGTGAACAATTTATCAAGAAATCCTTGGAAGAGAAGTCTCTAAGTTTAAAGCAAAAGGGTTCATTTGATGGGAGTAGGAAAGATATAAATGCTGCAA TTGATCGAATATGCGCGTTTACTGGTACCAAAATCATCTTCTGGGACTTGAGGGAGCCCTTCATTGAGAACTTATACAAACCATCGGTTGCACAAAACAG GCTGGAAGATCTAATCGAACCACTTGATGTAGAAGGCTTGCTCCGTGTTCTGTTAGATGGAGGACCGTCGCGAGTTTTCGCCAACACTGATGCAAAATTT CTAGAAGAAGATCTGGAGGTCTTGAAGGAATTCTTCATTTCTGGAGGAGACGGGCTTCCCAGAGGAGTAGTAGAGAACCACGTTGCACGTGTTAGGCAGG TGATCAAGCTACACGGTTATGAGACACGTGAGCTGATTGATGACCTGAGATCGTCGAGCGCCATGGAAAGGCACGGTGGTGGAGGGAGCAAGCTCGGTGG GGATACGCAGACGTTGCTGAGGATACTGTGCCATCGTGCAGAGCCAGAGGCATCCCAGTTCTTGAAGAAACAGTTCAAAATACCTAAGGCTTCTACTTAG
AA sequence Show only first row Show all	>Lus10008663 pacid=23161980 polypeptide=Lus10008663 locus=Lus10008663.g ID=Lus10008663.BGIv1.0 annot-version=v1.0 MEKQGRIIEEEKVCRRCKQSFTRSSNSSSACRFHPSFFVCRRHDDQKRYYELGPNDPPYAAKFYDCCGAEQPEAPGSSTQFLISLYSSHRIDYNPLFLCR FSTPKVGDLVIKELKLTWHSELFIMEDENAVELLQRYRRDRRILMDFILSGSLIKKVVMPPGAVTLDDVDLDQVSVDYVLNCAKKGGMLELSEAIRDYHD STGMPQMNSTSSADEFFLVTDPAFSGSPPRRAPPPIPVSAPVPIATAAPVFAPPLDESLSSVAKSESFNSVEERELTVDDIEDFEDDDLGTEELASARVV RRSQNDASDLAPKLPTFATGITDDDLRETAYEILLACAGASGGLIVPSKEKKKDKKSSLMRKLGRSKTQSLASQSDRAPGMVGLLETMRAQMEISESMDI RTRKGLLNALAGKVGKRMDTLLIPLELLCCISRTEFSDKKAYIRWQKRQLFILEEGLINHPVVGFGESGRKGSELRILLAKIEESEFRESSAGEVQRTEC LRSLREIATQLAERPARGDLTGEVCHWADGYHLNVKLYEKLLLSMFDILDEGKLTEEVEEILELFKSTWRVLGITETIHYTCYTWVLFRQFVITRELGVL HHAIEQLNRIPLREQRGPQERLHLKTLSSRADGEEFSFLHSFLLPIQKWADKQLGDYHLHFTEEPAVMEGILQVAIVTRRLLVEESETGTLSKSAMDRDQ IESYISSSIKMAFTRTLQVVDRSDDHSLALLAEETKKLLKKEASIFTPILSQRHPQALVISASLLHRLYGIKLKPFLDGAEHLTEDVVSVFPVADSLEQF IMSLISNACGGTAEVNLKKLNSYQVESVSGTLVMRWVNSQLGRLLGWVDRALQQERWEPISPQQRHGSSIVEVYRIVEETVDQFFALKVPMRSSELNSMF RCVDNAFQVYAKHVTDKLESKEDLIPPVPVLTRYRKEAGIKAFVKKELFEHKLPEEMTKSRAIDVQTTPILCVQLNTLFYAISQLNKLEDSIWSRWAAKK PREQFIKKSLEEKSLSLKQKGSFDGSRKDINAAIDRICAFTGTKIIFWDLREPFIENLYKPSVAQNRLEDLIEPLDVEGLLRVLLDGGPSRVFANTDAKF LEEDLEVLKEFFISGGDGLPRGVVENHVARVRQVIKLHGYETRELIDDLRSSSAMERHGGGGSKLGGDTQTLLRILCHRAEPEASQFLKKQFKIPKAST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06970			Protein of unknown function (D...		Lus10008663 [exp]	0	1
AT3G27325			hydrolases, acting on ester bo...		Lus10032122 [exp]	2.0	0.9452
AT1G60070			Adaptor protein complex AP-1, ...		Lus10030848 [exp]	2.8	0.9353
AT4G00440			Protein of unknown function (D...		Lus10028148 [exp]	5.7	0.9302
AT3G08530			Clathrin, heavy chain (.1)		Lus10030393 [exp]	8.5	0.9302
AT4G19490		ATVPS54	ARABIDOPSIS THALIANA VPS54 HOM...		Lus10038410 [exp]	11.2	0.9234
AT5G16210			HEAT repeat-containing protein...		Lus10009154 [exp]	11.5	0.9162
AT3G45850			P-loop containing nucleoside t...		Lus10018120 [exp]	11.5	0.8987
AT3G61130		GAUT1, LGT1	galacturonosyltransferase 1 (....		Lus10009311 [exp]	12.2	0.8704
AT1G60070			Adaptor protein complex AP-1, ...		Lus10012988 [exp]	13.4	0.9122
AT1G53300		TTL1	tetratricopetide-repeat thiore...		Lus10042854 [exp]	13.7	0.9042

Compare expression of checked genes

Lus10008663 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.