Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12270 559 / 0 ATPRMT3 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3, protein arginine methyltransferase 3 (.1) AT2G19670 201 / 9e-59 ATPRMT1A ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1A, protein arginine methyltransferase 1A (.1) AT4G29510 198 / 1e-57 ATPRMT1B, ATPRMT11 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) AT3G20020 192 / 2e-54 ATPRMT6 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) AT1G04870 137 / 3e-35 PRMT10, ATPRMT10 protein arginine methyltransferase 10 (.1.2) AT3G06930 129 / 2e-31 ATPRMT4B ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4B, protein arginine methyltransferase 4B (.1.2) AT5G49020 120 / 1e-28 ATPRMT4A ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026158 [exp] 1033 / 0 AT3G12270 613 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3, protein arginine methyltransferase 3 (.1) Lus10000982 [exp] 194 / 1e-55 AT4G29510 619 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Lus10040546 [exp] 193 / 3e-55 AT4G29510 617 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Lus10017367 [exp] 188 / 4e-53 AT3G20020 636 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) Lus10010162 [exp] 185 / 9e-53 AT3G20020 614 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) Lus10008577 [exp] 177 / 6e-49 AT4G29510 553 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Lus10043295 [exp] 129 / 3e-32 AT1G04870 553 / 0.0 protein arginine methyltransferase 10 (.1.2) Lus10019439 [exp] 128 / 7e-32 AT1G04870 551 / 0.0 protein arginine methyltransferase 10 (.1.2) Lus10043412 [exp] 126 / 1e-30 AT5G49020 770 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G030200 [exp] 654 / 0 AT3G12270 674 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3, protein arginine methyltransferase 3 (.1) Potri.006G149400 [exp] 192 / 3e-55 AT4G29510 597 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Potri.018G067200 [exp] 190 / 2e-54 AT4G29510 597 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Potri.007G000300 [exp] 184 / 5e-52 AT3G20020 582 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) Potri.018G071200 [exp] 138 / 2e-35 AT1G04870 551 / 0.0 protein arginine methyltransferase 10 (.1.2) Potri.010G014600 [exp] 117 / 1e-27 AT5G49020 764 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) Potri.008G222700 [exp] 115 / 5e-27 AT5G49020 762 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) Potri.014G004000 [exp] 76 / 2e-15 AT3G20020 305 / 9e-104 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008664 pacid=23161921 polypeptide=Lus10008664 locus=Lus10008664.g ID=Lus10008664.BGIv1.0 annot-version=v1.0 ATGGCCGACAACGAGGACCATTCTACTGAAGAAATCAGACGAACCCACAAAACTATTACCCCAGATCAATACATGGAAGAACAAGAAGAAGAAGAAGTTG AAGAGGACGATGACAAAGACTGGAACGATTGGGGGGAGGATGGAGATGAAGAACTCGACTCCAACTTCGTTTGTTTATTCTGCGTCTCCTTGTACACTTC CTCCCACGAGCTGTTTCAGCACTGTCGTTCAGCTCACAAGTTCGATTTCGAAGGGATAAGAAAAGCGTCGGGCTTGGATTTCTATGCTACTTTCAAGCTC GTCAACTACGTCCGCTCTCAGGTGGCAGAAAACAGATGCTGGAATTGTGGGGTTACTTGCGAATCCAGGGAGGACTTGCAGTGTCATTTACATGAACCAG CCAATTTGAAGAATGTTAAGCTTTTGTTGGATGATGACAAGTATCTGAAACCTTTTATGCAAGATGATATACTCCTGCACAGTTTTGAAGATGAAGATTC TGAGGATGATTATAAAGCTTCACCTGACAAACAAGAAATCATGAGCCTTCTGAGGGATGTTGAACTGCTCAATACAGATGAAGTTAATAGTAAGCAAAAC GGAACCAAAGAGCATGCCTCCTCTTCTTCAAATGGTCAGGATAGTGCCTCTACTACTATGAAGAGCGCAATGGTAAATGGTAGCAGGGCTGGAGAACGTG TTGCATCAGATGAAGCTTCAGATAGGCATTTGAAGAAATCTATTGTTAATCTCTCTGCAAATGTTAAGAAAGTCAACGAGGGCTACTTTGGTGCCTACAG TTCGTTTGGGATTCACAGAGACATGATTAGTGATAAGGTAAGGACTGATTCTTATAGGCAAGCACTTGTGCAAAATCCTTCTCTCTTGAAGGGTGCAGTT GTGATGGATGTCGGCTGTGGAACTGGCATCTTGAGGCGAGCATTTTGGAATCTTCAAGTGCCTTCATATTTACATGATAGCTACCTCTTTGCAGCCCAAG GAGGGGCTTCAAGAGTAATTTCAGTTGAAGCCAGTGAGAAGATGGCTTCTGTCGCAACACAGATCGCTAAAGACAATAACTTTTGGAGAACTGAAACTGA AGGAAATATCACTGGTGTCATGGAGGTGGTTCAAAGTATGGTTGAAGAAGTTGATAAATCCATAAAAATCGAGCCGCACAGTCTCGATGTACTAGTGAGT GAATGGATGGGATATTGCCTACTCTACGAGTCAATGCTCGGGTCAGTGCTATTCGCAAGGGATAAATGGTTGAAGCCAGGCGGTGCTATTCTACCCGATA CAGCAACTATGTATGTTGCCGGGTTTGGAAGAAGTTGCACTAGTCTTCCATTCTGGGAAGATGTGTATGGCTTCAACATGTCTTGTGTCGGAAACGAGCT TGTTCAAGATGCAGCTCGAGTCCCCATTGTTGATGTTGTGCAAGAATCTGATCTGGTTACTCATGCCTCGGTTCTTCAGAAATTCGATCTGGCGACTATG AAACCAGACGATGTGGACTTCACTGCTGCAGTCGAGTTAGAACCGAAATCTGAACCAACCTTGTGTTACGGAATTGTGATCTGGTTTGATACCGGGTTTA CCTCCAGATTCTGCAAAGAAGCACCGGCTCTTCTATCTACATCTCCTTGCACCCCGAAGACACATTGGTGCCAGACCCTACTCACCTTGCGGGAGCCAAT AGCAATCGCTCCGACAGGAAAACTCCAAGTCCGCATCAGCATTGTCCGAGGTACAGAGCATCGGAGCATAGACATCTCTGCGGAGGCTGCTGCAATTGGT CCTGATGGCAGGAAACAGAGCTTCCCCGCACAAATGTTCACTATGACTTAG
AA sequence Show only first row Show all	>Lus10008664 pacid=23161921 polypeptide=Lus10008664 locus=Lus10008664.g ID=Lus10008664.BGIv1.0 annot-version=v1.0 MADNEDHSTEEIRRTHKTITPDQYMEEQEEEEVEEDDDKDWNDWGEDGDEELDSNFVCLFCVSLYTSSHELFQHCRSAHKFDFEGIRKASGLDFYATFKL VNYVRSQVAENRCWNCGVTCESREDLQCHLHEPANLKNVKLLLDDDKYLKPFMQDDILLHSFEDEDSEDDYKASPDKQEIMSLLRDVELLNTDEVNSKQN GTKEHASSSSNGQDSASTTMKSAMVNGSRAGERVASDEASDRHLKKSIVNLSANVKKVNEGYFGAYSSFGIHRDMISDKVRTDSYRQALVQNPSLLKGAV VMDVGCGTGILRRAFWNLQVPSYLHDSYLFAAQGGASRVISVEASEKMASVATQIAKDNNFWRTETEGNITGVMEVVQSMVEEVDKSIKIEPHSLDVLVS EWMGYCLLYESMLGSVLFARDKWLKPGGAILPDTATMYVAGFGRSCTSLPFWEDVYGFNMSCVGNELVQDAARVPIVDVVQESDLVTHASVLQKFDLATM KPDDVDFTAAVELEPKSEPTLCYGIVIWFDTGFTSRFCKEAPALLSTSPCTPKTHWCQTLLTLREPIAIAPTGKLQVRISIVRGTEHRSIDISAEAAAIG PDGRKQSFPAQMFTMT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12270		ATPRMT3	ARABIDOPSIS THALIANA PROTEIN A...		Lus10008664 [exp]	0	1
AT4G29510		ATPRMT1B, ATPRM...	PROTEIN ARGININE METHYLTRANSFE...		Lus10000982 [exp]	1.7	0.9558
AT4G13780			methionine--tRNA ligase, putat...		Lus10016658 [exp]	2.8	0.9546
AT5G26830			Threonyl-tRNA synthetase (.1)		Lus10021402 [exp]	3.5	0.9508
AT5G10920			L-Aspartase-like family protei...		Lus10032846 [exp]	5.2	0.9521
AT2G40360			Transducin/WD40 repeat-like su...		Lus10011471 [exp]	6.7	0.9424
AT1G09640			Translation elongation factor ...		Lus10002536 [exp]	8.8	0.9470
AT1G77030			hydrolases, acting on acid anh...		Lus10028644 [exp]	9.2	0.9451
AT3G20000		TOM40	translocase of the outer mitoc...		Lus10010163 [exp]	9.7	0.9492
AT3G57290		ATINT6, ATEIF3E...	eukaryotic translation initiat...		Lus10042031 [exp]	12.6	0.9420
AT1G14610		VALRS, TWN2	VALYL TRNA SYNTHETASE, TWIN 2,...		Lus10034788 [exp]	15.5	0.9339

Compare expression of checked genes

Lus10008664 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.