Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53780 44 / 0.0002 Protein of unknown function (DUF295) (.1) AT4G22060 42 / 0.0005 F-box family protein with a domain of unknown function (DUF295) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013995 [exp] 437 / 1e-152 AT2G17030 52 / 6e-07 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10004148 [exp] 63 / 6e-12 ND 41 / 5e-05 Lus10000289 [exp] 58 / 1e-09 ND / Lus10022706 [exp] 47 / 2e-05 AT1G57790 293 / 3e-97 F-box family protein (.1) Lus10014208 [exp] 46 / 4e-05 AT1G57790 286 / 2e-94 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G014500 [exp] 85 / 7e-18 AT2G17030 130 / 9e-34 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.004G134900 [exp] 79 / 7e-16 AT4G17565 99 / 8e-23 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.002G015700 [exp] 71 / 1e-13 AT5G60060 63 / 5e-11 Protein of unknown function (DUF295) (.1) Potri.004G137700 [exp] 52 / 3e-07 AT4G22165 69 / 9e-13 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.006G015601 [exp] 49 / 3e-06 AT4G22660 59 / 3e-09 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.004G179685 [exp] 42 / 0.0006 AT2G17030 360 / 2e-121 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.009G140000 [exp] 42 / 0.0007 AT2G17030 370 / 6e-126 F-box family protein with a domain of unknown function (DUF295) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03478 [flax] [poplar] DUF295 Protein of unknown function (DUF295)
Representative CDS sequence Show only first row Show all	>Lus10008665 pacid=23161939 polypeptide=Lus10008665 locus=Lus10008665.g ID=Lus10008665.BGIv1.0 annot-version=v1.0 ATGGCGGACGTCGCATTAAGAGATTGGGCGGGAGGACTTCCGGAAGAGATTCTCAATTTGGTCCTACTGAAATTGATTCCGTTACAAGATTACATCAGAT TCAGCAGCGTGTGCAAGTGGTGGAATTATGCAGCAAAAGAACAGAGGCACAGTCGTATCGCCACCAGTCAGAAACAAGTTCCTCTGCTCCTGGTACCGAC AAAAACCGGCAGTAAGGAATTGCGCAGTCTATACAGTTTAAGCAATGATGATCTCCTCCAGTCTGAACTCGGAATCCTTAACGATAGGAGGTGTTGCGGG TCATCTTATGGCTGGCTCGCTTTTGTGGAGGAAGATTATCGAGTCGCGCTCTTTAACCCATTCACTCAATCTGTAATCTACCTCCCTCCCATTGCCGATT ATGAGAGTTACATTCAAATTATTCCAAGAGATCCTCGGAGATATTTTCAATACTTTGCCAAAAGGCTCATCTTATCGGCGGATCCTTCTCTTTATCCCAA TGATTATGTAGCCGCGGCGCTTATTAATGACCCGTTCAGAACTCTAGCTATAATCCGACCCAGTCGAGATAGAGAATGGAGAAAAATCACCAAGTGGTCG AACCACCAAGGCAAACAAGGGCTGACGTTCGACTTGATATTTGACGAGAGTGGTAATTGGGTTTACGCCTCCGGAGACAATGGGTTGGTTGCACGTACAA ATATCCATGTTCAAAATCCGGTTTTGGAGTTGGTGGTCAAACCGTGGATCCCGAACTATCTAGCAACTTATCAAAAGTATTTGGTCGAGACGACATCGGA TAATGGTACTCGAGATATGCTTATGATTCTACGCATCTATCAACACCATTTCTGTTATACTGATATGATTTTCACGTTGACCAAAGCCATAAAGGTGTTC AAGCTTCAAAATTCTAAGTTTGTCAAGGTGGATCATCTTAATGGAAATGCGGTGTTTATTGGGGATAATTCTTCGACTGCAGTTTTGGTTGCAAAATTTC CAGATGTTGAAGAGAATTGGATCTATTACACCGATGATTTTGTAGAGTTTTCATGTCATTACCATCACAAAGGTCCTTGCGATATTGGGAAATATAATGT GAAAGATAGAAAATTTAGTACACATTATGTTCCCTATAATCGTAAATGGCCACCTTCTATTTGGATATTTCCTACCTTAAACCCATAA
AA sequence Show only first row Show all	>Lus10008665 pacid=23161939 polypeptide=Lus10008665 locus=Lus10008665.g ID=Lus10008665.BGIv1.0 annot-version=v1.0 MADVALRDWAGGLPEEILNLVLLKLIPLQDYIRFSSVCKWWNYAAKEQRHSRIATSQKQVPLLLVPTKTGSKELRSLYSLSNDDLLQSELGILNDRRCCG SSYGWLAFVEEDYRVALFNPFTQSVIYLPPIADYESYIQIIPRDPRRYFQYFAKRLILSADPSLYPNDYVAAALINDPFRTLAIIRPSRDREWRKITKWS NHQGKQGLTFDLIFDESGNWVYASGDNGLVARTNIHVQNPVLELVVKPWIPNYLATYQKYLVETTSDNGTRDMLMILRIYQHHFCYTDMIFTLTKAIKVF KLQNSKFVKVDHLNGNAVFIGDNSSTAVLVAKFPDVEENWIYYTDDFVEFSCHYHHKGPCDIGKYNVKDRKFSTHYVPYNRKWPPSIWIFPTLNP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55150			Protein of unknown function (D...		Lus10008665 [exp]	0	1
AT3G25440		LOH1	LAG One Homologue 1, RNA-bindi...		Lus10009566 [exp]	7.9	0.5145
AT5G06740			Concanavalin A-like lectin pro...		Lus10029290 [exp]	14.4	0.4779
AT5G42830			HXXXD-type acyl-transferase fa...		Lus10026686 [exp]	27.2	0.4515
AT3G14040			Pectin lyase-like superfamily ...		Lus10038316 [exp]	45.0	0.4397
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Lus10027013 [exp]	52.0	0.4209
					Lus10022857 [exp]	64.7	0.4234
AT2G32645			Domain of unknown function (DU...		Lus10020591 [exp]	77.4	0.3805
					Lus10029999 [exp]	88.6	0.4194
AT3G04620		DAN1	D NUCLDUO1-ACTIVATEEIC ACID BI...		Lus10006564 [exp]	112.2	0.3834
AT3G60680			Plant protein of unknown funct...		Lus10034935 [exp]	123.2	0.3513

Compare expression of checked genes

Lus10008665 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.