Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16380 143 / 2e-38 ATCHX1 CATION EXCHANGER 1, Cation/hydrogen exchanger family protein (.1) AT1G79400 143 / 2e-38 ATCHX2 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1) AT2G13620 114 / 3e-28 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT3G52080 108 / 3e-26 CHX28 cation/hydrogen exchanger 28 (.1) AT1G05580 103 / 1e-24 ATCHX23 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) AT1G06970 96 / 5e-22 ATCHX14, CHX14 cation/hydrogen exchanger 14 (.1) AT3G53720 96 / 6e-22 ATCHX20 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) AT2G31910 91 / 3e-20 ATCHX21 cation/H+ exchanger 21, cation/H+ exchanger 21, cation/H+ exchanger 21 (.1) AT3G44930 84 / 4e-18 ATCHX10 cation/H+ exchanger 10, cation/H+ exchanger 10, cation/H+ exchanger 10 (.1) AT2G30240 84 / 7e-18 ATCHX13 CATION/H+ EXCHANGER 13, Cation/hydrogen exchanger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026155 [exp] 315 / 8e-108 AT1G79400 265 / 1e-82 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1) Lus10024131 [exp] 248 / 2e-77 AT1G79400 580 / 0.0 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1) Lus10024132 [exp] 196 / 3e-57 AT1G16380 641 / 0.0 CATION EXCHANGER 1, Cation/hydrogen exchanger family protein (.1) Lus10016403 [exp] 126 / 1e-32 AT3G52080 856 / 0.0 cation/hydrogen exchanger 28 (.1) Lus10019716 [exp] 125 / 2e-32 AT3G52080 857 / 0.0 cation/hydrogen exchanger 28 (.1) Lus10029506 [exp] 122 / 4e-31 AT3G52080 850 / 0.0 cation/hydrogen exchanger 28 (.1) Lus10030013 [exp] 116 / 4e-29 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10035312 [exp] 115 / 8e-29 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10008676 [exp] 110 / 7e-27 AT3G06530 1137 / 0.0 ARM repeat superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G194200 [exp] 202 / 1e-59 AT1G79400 625 / 0.0 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1) Potri.003G194100 [exp] 194 / 9e-57 AT1G79400 597 / 0.0 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1) Potri.007G105200 [exp] 125 / 4e-32 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.009G059400 [exp] 121 / 7e-31 AT3G52080 803 / 0.0 cation/hydrogen exchanger 28 (.1) Potri.007G111400 [exp] 100 / 9e-24 AT1G05580 645 / 0.0 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) Potri.010G183000 [exp] 94 / 1e-21 AT2G13620 474 / 8e-156 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.004G131300 [exp] 94 / 2e-21 AT2G13620 640 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.007G102700 [exp] 93 / 5e-21 AT2G13620 525 / 3e-175 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.003G134900 [exp] 92 / 7e-21 AT5G41610 989 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.001G264600 [exp] 91 / 3e-20 AT3G52080 710 / 0.0 cation/hydrogen exchanger 28 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008666 pacid=23161966 polypeptide=Lus10008666 locus=Lus10008666.g ID=Lus10008666.BGIv1.0 annot-version=v1.0 ATGGTATCCCCTCTGGACGCCCAGTTACAGTCAATTAAGTCCGTTGCACAAGTGAGTGACATTGACTCTGGGAAGAGACCCTTTACTCGGCCCTCTATTC TCTATGACGCTAAAGAAGCCGCAGACATTGGTATCGATGTAATCCACAGTTTGGCAGCTACAGGCTCGTGGAGGCTGGACGGGAAGCTGGAGAGGGGGAA GCCAGGGGTACGGACGACGAACCAAAAGGTTTTGCGGCAGGCGGCGTGCTCGGTCGGGATATTCGTCGACAGAGGACAGACCGGGTTCCAGATTCCGTCG CCGGACCACGTGCAGAACGTGGATGTGATTTTCTTCGGCGGGCCGGACGACAGGGAGGCGGTGGCGTGTAGCAAGCGGATGGCGACGCATCAGTTCGTAC GGAAGACGCTGGTGAGATTTCTTCCGGCGGAGGAGGATGCTGAGGCGGCGGAGAAGGGAGAGTACGAAGGGAGGAGTAGTAGTCAGCGGAGTCAGGAGGA AGAAGTATTGATGGAGATGCCGGAGGTGGAAGGGGAGATGGATAATGCTTGCATCAATGATTTCTACAACAGGTATGTTGCAGAAGGGAAAGTTGAATAT GAAGAGATTGAAGGAATGTATTCATTATTCATAGTTGGGAAACGAGGAGGTGGAGGTAGCTCTAGTTTGGCCGCAATGACCAGAGATATGAGCGATTGGG AAGAATGTCCAGAACTTGGAACTGTGGGAGATCTGCTAGCTTCTACTGAGATCACCAGCATCAATGCTTCAGTATTGGTCATCCAACAGTATCGTCGTTC TCCTTCCCAAATACGGGACTGA
AA sequence Show only first row Show all	>Lus10008666 pacid=23161966 polypeptide=Lus10008666 locus=Lus10008666.g ID=Lus10008666.BGIv1.0 annot-version=v1.0 MVSPLDAQLQSIKSVAQVSDIDSGKRPFTRPSILYDAKEAADIGIDVIHSLAATGSWRLDGKLERGKPGVRTTNQKVLRQAACSVGIFVDRGQTGFQIPS PDHVQNVDVIFFGGPDDREAVACSKRMATHQFVRKTLVRFLPAEEDAEAAEKGEYEGRSSSQRSQEEEVLMEMPEVEGEMDNACINDFYNRYVAEGKVEY EEIEGMYSLFIVGKRGGGGSSSLAAMTRDMSDWEECPELGTVGDLLASTEITSINASVLVIQQYRRSPSQIRD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79400		ATCHX2	cation/H+ exchanger 2, cation/...		Lus10008666 [exp]	0	1
AT5G35390			Leucine-rich repeat protein ki...		Lus10017144 [exp]	9.8	0.5760
					Lus10014200 [exp]	28.5	0.4611
					Lus10013570 [exp]	56.9	0.4456
					Lus10012774 [exp]	81.8	0.4250
					Lus10033709 [exp]	124.7	0.4293
AT1G35710			Protein kinase family protein ...		Lus10002293 [exp]	137.1	0.4247
AT5G24910		ELA1, CYP714A1	EUI-like p450 A1, cytochrome P...		Lus10003361 [exp]	140.6	0.4114
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10027430 [exp]	156.7	0.3924
AT1G73890			Bifunctional inhibitor/lipid-t...		Lus10042984 [exp]	178.9	0.3899
AT5G62380	NAC	ANAC101, VND6	VASCULAR-RELATED NAC-DOMAIN 6,...		Lus10024907 [exp]	193.9	0.3829

Compare expression of checked genes

Lus10008666 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.