Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12280 1229 / 0 RB1, RBL1, RBR1, ATRBR1 RETINOBLASTOMA 1, RETINOBLASTOMA-RELATED PROTEIN 1, retinoblastoma-related 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026154 [exp] 1917 / 0 AT3G12280 1247 / 0.0 RETINOBLASTOMA 1, RETINOBLASTOMA-RELATED PROTEIN 1, retinoblastoma-related 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G031400 [exp] 1469 / 0 AT3G12280 1377 / 0.0 RETINOBLASTOMA 1, RETINOBLASTOMA-RELATED PROTEIN 1, retinoblastoma-related 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF01858 [flax] [poplar] RB_A Retinoblastoma-associated protein A domain CL0065 [flax] [poplar] Cyclin PF11934 [flax] [poplar] DUF3452 Domain of unknown function (DUF3452) CL0065 [flax] [poplar] Cyclin PF01857 [flax] [poplar] RB_B Retinoblastoma-associated protein B domain
Representative CDS sequence Show only first row Show all	>Lus10008667 pacid=23161976 polypeptide=Lus10008667 locus=Lus10008667.g ID=Lus10008667.BGIv1.0 annot-version=v1.0 ATGGAAGATACAAAGCCTTCAACTGAGGTTTCCAATGATCCTAAAAGCAATGGAGGAGAAGTTGATGCCTTTGAAGTGCGGTTCAGGGAATTGTGCGAGA GTCTACTATGTTTGGACGAGAAGACTTCTGCAGAAGGTATGAAGCTTTTCAAAGAGACAAAGCATATTATGTTGTCTGGCGTTTCAGCTGTTGGAAATGG CACGCCTGAAGAAGTCGAAAGATTTTGGTCTGCATTTGTTCTGTATTCTGTCAAAAGGCTGTTCAAGAATACTGGAGACATGGAGCAGCAGCCATCAGCC TATGACAATGGATTAACATTGTGCCAGATATTAAGATCTGCAAAGCTGAACTTCTTGGACTTCTTCAAAGAGCTGCCTCATTTTGTCGTGAAAGTGGACC CAATATTTAGTCATATCTATGGTTCAGACTGGCAGAAGAGACTAGAGGCGAAGGAGTTGCAAGCCAATTTTTTGCACTTGAGCTCTCTAAGCAGGCATTA CAAGCGTGCATATCAGGAACTTTTCTTGATGATTGATACAAATATTGACAAGGAACCAGCAGATTCTAGTGCCATATCATGTGCCTCAGACTATCATCGG TTCGGATGGATGCTGTTTTTGTGCCTCCGTGTACATGAATTGAATCATGTTAAGGATCTAGTGACTTGCATTAACGGATTGATTTCTGTACTGGCTATTC TGATTATACATCTCCCAGTTCGGTTCAGAAAATTCAACTTGAAGGACGATGGGTGGTTTGCTAAGAGAGGTGACAAAGGTGTTCAGTTGCTTGCATCCCT TTGCCATAAGTATGAGACATCAGAGGATGACCTCAAAAAAATGATGGAGAAGACCAATAATTTATTAAGAGAGGTCCTGAAGGGAAAACCTCAGATGGCT TCTGAATGTAAAAGTGAAAGCTTGTCAGACATAGATACAGAGGGTTTGATTTATTATGAAGGTTTGATGGAGGAATCATCCCTGGGAACAAGTTTGAATA CCTTGCAGAAGGATTATGATGAGGCCCTTCGTGCGAGTGGTGGTGATCTGGATGAGAGAGTTTTCATGGATGAGGACGTCAGCTTACTTGGTTCAGGAAG CCCATCTGCGAGTGCCAATAATATCGTTGGAAATAAGGTGAGTTCTGCTGAAGAGTGCTCATTCCTGAACAGAAAGAGGAAAATTGATTCAGTATACTCA CCCGCAAGAACGATTAGAAGTCCTCTTTCTCCTAACCGTTCTCCTGCACCCCATGCAAATGGAAGTCTTAATACTGAACACTCTAAGATGGCTCCGACTC CAGTAAGCACAGCAATGACGACAGCAAAATGGCTCCGAACTGTAGTATCTCCACTGCCACCTAAGCCTTCACCTCAGTTGGAGCGTTTCCTAGTATCATG TGATAGGGATGTTACGAATGAGGTGGCACGTAGAGCTTATATAATATTGGAAGCAATATTCCCGTGTAGCTCTCTGGGAGACCGTTGTGTGACTGGAGAT CTTCAAACGACAAATCTGATGGATAACATATGGGCAGAACAACGACGATTAGAAGCTCTCAAGCTGTATTATAGGGTTTTGGAGGCAATGTGTACTGCAG AGGCCCAAATTTTGCATGCAACGAATCTGACGTCTTTACTAACCAATGAAAGGTTCCATAGATGCATGCTCGCATGTTCAGCTGAACTAGTTTTGGCAAC ACACAAGACTGTTACAATGTTGTTTCCTGCTGTACTGGAGAGAACTGGCATCACAGCTTTTGATCTTGGCAAGGTAATAGAGAGTTTCGTTAGACACGAA GAGTCTCTTCCTAGAGAATTGAGGAGGCATTTGAATTCCTTAGAAGAGCGACTTTTGGAGAGTCTGGTCTGGGAAAAGGGTTCTTCATTGTACAATTCTC TAACAGTTGCAAGACCTGCACTCTCTGTGGAGATTAATCGTCTTGGGTTGCTGGCTGAACCAATGCCATCTTTAGATGCAATTGCAATGCATATGAACCT TTCTTCAGCGGGTCTGCCGCCTGTGCCTTTTGTACTAAAGCAGGAGATGGATACAGGTCAAAATGGCGATATGAGGTCTCCGAAAAGGCCTTGTACAGAC TACAGGAGTGTATTGGTCGAGAGAAATTCATTTACATCCCCGGTAAAGAGAAATTCCTTTACGTCACCAGTAAAAGATCGGTTACTAGCCCTTAAGTCAA AGCTGCCACCACCAGCTCTTCAATCTGCGTTTGCCAGTCCTACACGTCCAAATCCCGGAGGAGGTGGTGAAACTTGTGCTGAAACTGGGATCAACATATT CTTTGGCAAGATCAATAAGCTGGCTGCGGTCAGAATCAATGGCATGATCGAAAGGTTACAACTTTCGCAGCAGCACATAAGAGAGAATGTCTACTGTCTA TTTCAGCAAGTACTCAGTCAACGAACATCTCTCTTCTTCAACCGCCACATTGATCAAATCCTCCTTTGTTGTCTCTACGGAATTGCAAAGATTTCAAAAG TCAACTTGACTTTTAAGGAAATCATTTACAACTATAGGAAGCAACCACAGTGTAAGCCACAAGTATTCCGCAGTGTATTTGTTGATTGGTCATCAGCACA CCACAACTCAAGGACAGGACAGGATCATGTCGATATAATCACATTTTACAATGAGATTTTCATCCCCGTCGCAAAAACTCTGCTCGTAGACATTGGTTCT GCTGCAACAATCGCTAGAGCTAATCAGGCCTCTGAAGTCAACAATAACAAAGATGGTCAGTGTCCAGCATCTCCTAAAGTATCTCCATTTTCGACTCTCC CTGATATGTCTCCGAAGAAAGTATCGGCATTACATAATGTCTATGTCTCGCCACTTCGAACGTCCAAGATGGATGCTCTGATATCACACAGTTCGAAAAG CTATTACGCTTGTGTGGGGGAGAGCACTCATGCATACCAGAGCCCATCTAAAGACCTGACTGCTATCAATAACCGCTTGAATAGCAACCGGAAGGCGAAG GTATCGCTAGCATTTGATGGTGCTGATGTCGGGCTGGTGAGTGATTCCATGGTGGCAAACAGCCTCAACCTCGAGAATGGAAATTGTGGATCTCCTATGA AAACTGAGCAACAACCCAACTCGTAG
AA sequence Show only first row Show all	>Lus10008667 pacid=23161976 polypeptide=Lus10008667 locus=Lus10008667.g ID=Lus10008667.BGIv1.0 annot-version=v1.0 MEDTKPSTEVSNDPKSNGGEVDAFEVRFRELCESLLCLDEKTSAEGMKLFKETKHIMLSGVSAVGNGTPEEVERFWSAFVLYSVKRLFKNTGDMEQQPSA YDNGLTLCQILRSAKLNFLDFFKELPHFVVKVDPIFSHIYGSDWQKRLEAKELQANFLHLSSLSRHYKRAYQELFLMIDTNIDKEPADSSAISCASDYHR FGWMLFLCLRVHELNHVKDLVTCINGLISVLAILIIHLPVRFRKFNLKDDGWFAKRGDKGVQLLASLCHKYETSEDDLKKMMEKTNNLLREVLKGKPQMA SECKSESLSDIDTEGLIYYEGLMEESSLGTSLNTLQKDYDEALRASGGDLDERVFMDEDVSLLGSGSPSASANNIVGNKVSSAEECSFLNRKRKIDSVYS PARTIRSPLSPNRSPAPHANGSLNTEHSKMAPTPVSTAMTTAKWLRTVVSPLPPKPSPQLERFLVSCDRDVTNEVARRAYIILEAIFPCSSLGDRCVTGD LQTTNLMDNIWAEQRRLEALKLYYRVLEAMCTAEAQILHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLGKVIESFVRHE ESLPRELRRHLNSLEERLLESLVWEKGSSLYNSLTVARPALSVEINRLGLLAEPMPSLDAIAMHMNLSSAGLPPVPFVLKQEMDTGQNGDMRSPKRPCTD YRSVLVERNSFTSPVKRNSFTSPVKDRLLALKSKLPPPALQSAFASPTRPNPGGGGETCAETGINIFFGKINKLAAVRINGMIERLQLSQQHIRENVYCL FQQVLSQRTSLFFNRHIDQILLCCLYGIAKISKVNLTFKEIIYNYRKQPQCKPQVFRSVFVDWSSAHHNSRTGQDHVDIITFYNEIFIPVAKTLLVDIGS AATIARANQASEVNNNKDGQCPASPKVSPFSTLPDMSPKKVSALHNVYVSPLRTSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNSNRKAK VSLAFDGADVGLVSDSMVANSLNLENGNCGSPMKTEQQPNS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12280		RB1, RBL1, RBR1...	RETINOBLASTOMA 1, RETINOBLASTO...		Lus10008667 [exp]	0	1
AT2G03070		MED8	mediator subunit 8 (.1)		Lus10037308 [exp]	1.7	0.8872
AT1G09010			glycoside hydrolase family 2 p...		Lus10029917 [exp]	2.6	0.8820
AT5G07670			RNI-like superfamily protein (...		Lus10038927 [exp]	3.5	0.8843
AT1G42440			unknown protein		Lus10013232 [exp]	3.7	0.8938
AT5G11200			DEAD/DEAH box RNA helicase fam...		Lus10014260 [exp]	3.9	0.8839
AT5G20170			RNA polymerase II transcriptio...		Lus10043284 [exp]	4.1	0.8660
AT4G15900		PRL1	pleiotropic regulatory locus 1...		Lus10037500 [exp]	5.7	0.8665
AT5G11860		SSP5	SCP1-like small phosphatase 5 ...		Lus10015787 [exp]	6.0	0.8687
AT2G21440			RNA-binding (RRM/RBD/RNP motif...		Lus10042589 [exp]	7.2	0.8906
AT5G25800			Polynucleotidyl transferase, r...		Lus10029748 [exp]	7.7	0.8667

Compare expression of checked genes

Lus10008667 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.