Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19440 389 / 7e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G51410 380 / 2e-132 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09490 362 / 1e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G09480 362 / 7e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G66800 359 / 3e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09510 349 / 2e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09500 332 / 2e-113 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G35420 273 / 2e-90 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) AT5G58490 256 / 7e-84 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G15950 245 / 3e-79 IRX4, ATCCR1, CCR1 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014363 [exp] 394 / 9e-138 AT5G19440 420 / 3e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002302 [exp] 392 / 3e-137 AT5G19440 413 / 2e-145 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024130 [exp] 409 / 4e-136 AT5G09860 933 / 0.0 nuclear matrix protein-related (.1.2) Lus10026070 [exp] 389 / 4e-136 AT5G19440 419 / 4e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002300 [exp] 385 / 1e-134 AT5G19440 423 / 2e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10009955 [exp] 381 / 7e-133 AT1G51410 548 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10039595 [exp] 379 / 6e-132 AT5G19440 462 / 6e-165 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026152 [exp] 358 / 5e-125 AT5G19440 291 / 7e-99 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10019732 [exp] 347 / 1e-119 AT5G19440 349 / 3e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G057800 [exp] 409 / 8e-144 AT5G19440 435 / 5e-154 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057500 [exp] 395 / 1e-138 AT5G19440 444 / 1e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057600 [exp] 394 / 7e-138 AT5G19440 474 / 7e-170 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G052000 [exp] 391 / 8e-137 AT1G51410 563 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G256400 [exp] 375 / 2e-130 AT5G19440 552 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G138600 [exp] 266 / 7e-88 AT4G35420 535 / 0.0 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) Potri.008G120200 [exp] 263 / 1e-86 AT1G68540 505 / 0.0 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.009G076300 [exp] 252 / 3e-82 AT5G58490 511 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G181400 [exp] 250 / 2e-81 AT1G15950 503 / 1e-180 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G045000 [exp] 248 / 1e-80 AT1G15950 484 / 3e-173 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10008668 pacid=23161932 polypeptide=Lus10008668 locus=Lus10008668.g ID=Lus10008668.BGIv1.0 annot-version=v1.0 ATGAGCGGAGAAGGGAAAGTGGTGTGCGTAACAGGCGCTTCAGGGTTCATAGCATCATGGTTGGTCAAGCTGTTGCTTCACCATGGATACACTGTCAACG CTACTGTTCGTGACCCATGTGACTCGAAGAAGACAGAGCATCTACTGAGGCTTGATGGAGCCAAGGAAAGACTGCATCTTTTCAAAGCAGACTTGCGGGA AGAAGGGTCTTTTGATTCTGCTATTCAAGGGTGTGATGGGGTTTTCCACACTGCTTCCCCTATTTCCTTCTCTGCCACTGATCCTCAGACGGAGATACTT GATCCTGCGGTAAACGGGACTATGAATGTACTGAGATCGTGCGCCAAATGCCCATCTGTGAAGAGAGTGATCGTCACCTCCTCCATTGCAGCAATGTTCT ACACAGGGGAACCAGTAACCCAAGACACGGTCGCCGACGAGACTTGGTGGTCCGACACGGCGGTTTGCAAACAGCTAGCGGTTTGGTACCAACTCAGCAA GACTTTATCTGAGAGTGCCGCCTGGGCCTTTGCAAAGGAGAATGGGCTCGACTTGGTCGCAGTGAATCCTGGGTTTGTGAATGGGCCGTTTTTGCAGCCC GCTCCTACCTTTTCTGTGGAGATAGTTCTCAACCTGGTCAATGGAGGAACACGAACATACCCGAGGTTTTATTACTGGTCGGTTGATGTCAGAGATGTTG CGGAAGCTCATGTCAAAGCCTTTGAAACCCAGTCAGCTTCAGGCAGATACTGTTTAGTTGGAAGCAATGCTGATTTTCCTCAAGTCCTGCAGATTATTCA TCGACAATACCCCATGCTACTTCTTCCTGACAAATGTGAGGAAATCGACAGTATTGCAAAGGTGGCAGGTTTCAAGGCATCGAAGAAGAAGGCAGAAGAA GGATTGGGAATGAAGTTCATCCCATTGGAGGTGTCTCTCAGGGACACTATTGAGTGCCTCAAAGACAAGGGCTTCCTTCACTTCTGA
AA sequence Show only first row Show all	>Lus10008668 pacid=23161932 polypeptide=Lus10008668 locus=Lus10008668.g ID=Lus10008668.BGIv1.0 annot-version=v1.0 MSGEGKVVCVTGASGFIASWLVKLLLHHGYTVNATVRDPCDSKKTEHLLRLDGAKERLHLFKADLREEGSFDSAIQGCDGVFHTASPISFSATDPQTEIL DPAVNGTMNVLRSCAKCPSVKRVIVTSSIAAMFYTGEPVTQDTVADETWWSDTAVCKQLAVWYQLSKTLSESAAWAFAKENGLDLVAVNPGFVNGPFLQP APTFSVEIVLNLVNGGTRTYPRFYYWSVDVRDVAEAHVKAFETQSASGRYCLVGSNADFPQVLQIIHRQYPMLLLPDKCEEIDSIAKVAGFKASKKKAEE GLGMKFIPLEVSLRDTIECLKDKGFLHF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10008668 [exp]	0	1
AT4G40010		SNRK2-7, SNRK2....	SUCROSE NONFERMENTING 1-RELATE...		Lus10037685 [exp]	3.5	0.8843
AT1G18010			Major facilitator superfamily ...		Lus10020560 [exp]	4.0	0.8748
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10026070 [exp]	8.4	0.8643
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10031676 [exp]	9.6	0.8707
AT4G18060			SH3 domain-containing protein ...		Lus10015253 [exp]	11.4	0.8537
AT5G58110			chaperone binding;ATPase activ...		Lus10040580 [exp]	14.1	0.8377
AT2G38760		ANN3, ANNAT3	annexin 3 (.1)		Lus10039550 [exp]	15.0	0.8558
AT1G70780			unknown protein		Lus10031920 [exp]	15.3	0.8169
AT4G10550			Subtilase family protein (.1.2...		Lus10035478 [exp]	15.4	0.8262
AT3G10870		ATMES17, MES17	ARABIDOPSIS THALIANA METHYL ES...		Lus10029011 [exp]	15.7	0.8198

Compare expression of checked genes

Lus10008668 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.