Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19440 204 / 2e-64 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G51410 192 / 1e-59 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09480 180 / 3e-54 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09510 169 / 8e-51 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G66800 169 / 2e-50 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09490 166 / 1e-49 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G09500 157 / 2e-46 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT2G02400 129 / 2e-35 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G58490 127 / 2e-34 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G35420 120 / 7e-32 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008668 [exp] 284 / 3e-95 AT5G19440 388 / 9e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026152 [exp] 237 / 4e-78 AT5G19440 291 / 7e-99 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024130 [exp] 228 / 2e-68 AT5G09860 933 / 0.0 nuclear matrix protein-related (.1.2) Lus10014363 [exp] 214 / 6e-68 AT5G19440 420 / 3e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026070 [exp] 214 / 8e-68 AT5G19440 419 / 4e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002300 [exp] 210 / 2e-66 AT5G19440 423 / 2e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002302 [exp] 207 / 4e-65 AT5G19440 413 / 2e-145 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10009955 [exp] 201 / 7e-63 AT1G51410 548 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10039595 [exp] 197 / 2e-61 AT5G19440 462 / 6e-165 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G057800 [exp] 216 / 1e-68 AT5G19440 435 / 5e-154 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057600 [exp] 214 / 6e-68 AT5G19440 474 / 7e-170 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057500 [exp] 204 / 4e-64 AT5G19440 444 / 1e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G052000 [exp] 199 / 5e-62 AT1G51410 563 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G256400 [exp] 198 / 1e-61 AT5G19440 552 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G230900 [exp] 134 / 4e-37 AT2G02400 493 / 3e-177 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G138600 [exp] 131 / 4e-36 AT4G35420 535 / 0.0 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) Potri.009G076300 [exp] 120 / 5e-32 AT5G58490 511 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G120200 [exp] 119 / 2e-31 AT1G68540 505 / 0.0 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G004100 [exp] 111 / 1e-28 AT2G33590 438 / 1e-155 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10008669 pacid=23161965 polypeptide=Lus10008669 locus=Lus10008669.g ID=Lus10008669.BGIv1.0 annot-version=v1.0 ATGAGCGGTAGTAGTGGAGAAGGGAAAGTGGTGTGTGTAACAGGCGCTTCAGGTTTTATAGCAACCCAGTTACGGTTCCGAGAGGAGTACAAGGTTTCTG ATCAGGGTTTGTATTCACGGAAGGAGATAGTGGATCCAGCAGTAAAAGGGACGCTAAATGTACTGAAGTCATGTGCAAAGTCTCCAACCGTCAAGAGAAT TATCGGCACCTCCTCCGTTGCAACAATGTCCTTCACTGTGAAACCAATAACCGGAGACTCGGTGGCCGATGAGACTTGGTTCTCCGACCCAGCAGTTTGC GAGAAACTTCAGATGTGGTACCAACTTGGCAAGACGTTGGCAGAGAAAGCTGCCTGGGATTTCACAAAGGAGAATGGGATTGACTTGGTAACAATGCATC CTGGAATTGTGAATGGGCCATTTTTACAGCCAGCACCTACCTACTCGGTTGACATAGTTCTCAACCTAGTTAACGGACGAAACCAGACATACCCCTCGTA CTACTACTGTTCTGTCGATGTTAGAAATGTCGCGGAGGCTCGTCTCAAAACATTCAAGATTATATCAGCTTCCGGCAAATACTGTTTAGTGGTGATTTTC CTCAAGTCCTGCGGATTATTCATGAGCTTTACCCCACGCTGCATCTTCCTAACAAAACTGATTAGTACTGCAAAGATGCCGACGTTTGAGGTATCGAAGA AGAAGGGAGATGAAGGATTGGGAATGAAGTTCACACCTCTGGAGGTGTCTCTCAAGGACACTATTGAATGTTTGAAAGGCAAAGGGCTTCCTTCACTTCT GATTCGTGATCTCGCGAGTTTTTTCTATCTCGAAATGCCTACCATGTCCACTACATAG
AA sequence Show only first row Show all	>Lus10008669 pacid=23161965 polypeptide=Lus10008669 locus=Lus10008669.g ID=Lus10008669.BGIv1.0 annot-version=v1.0 MSGSSGEGKVVCVTGASGFIATQLRFREEYKVSDQGLYSRKEIVDPAVKGTLNVLKSCAKSPTVKRIIGTSSVATMSFTVKPITGDSVADETWFSDPAVC EKLQMWYQLGKTLAEKAAWDFTKENGIDLVTMHPGIVNGPFLQPAPTYSVDIVLNLVNGRNQTYPSYYYCSVDVRNVAEARLKTFKIISASGKYCLVVIF LKSCGLFMSFTPRCIFLTKLISTAKMPTFEVSKKKGDEGLGMKFTPLEVSLKDTIECLKGKGLPSLLIRDLASFFYLEMPTMSTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10008669 [exp]	0	1
AT4G30550		GGP3	gamma-glutamyl peptidase 3, Cl...		Lus10015493 [exp]	3.0	0.9724
					Lus10017955 [exp]	4.0	0.9721
					Lus10009927 [exp]	5.5	0.9677
AT3G29760			Haloacid dehalogenase-like hyd...		Lus10027135 [exp]	5.7	0.9383
					Lus10039496 [exp]	6.9	0.9663
AT2G24960			unknown protein		Lus10042421 [exp]	7.7	0.9661
					Lus10018837 [exp]	8.1	0.9617
					Lus10003893 [exp]	8.9	0.9579
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Lus10006555 [exp]	9.2	0.8643
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Lus10023966 [exp]	9.4	0.8583

Compare expression of checked genes

Lus10008669 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.