Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18190 946 / 0 TCP-1/cpn60 chaperonin family protein (.1) AT1G24510 301 / 7e-96 TCP-1/cpn60 chaperonin family protein (.1.2) AT5G20890 261 / 1e-80 TCP-1/cpn60 chaperonin family protein (.1) AT3G20050 253 / 2e-77 ATTCP-1 T-complex protein 1 alpha subunit (.1) AT3G11830 247 / 6e-75 TCP-1/cpn60 chaperonin family protein (.1.2) AT5G26360 227 / 2e-67 TCP-1/cpn60 chaperonin family protein (.1) AT3G03960 222 / 1e-65 TCP-1/cpn60 chaperonin family protein (.1) AT5G16070 176 / 2e-48 TCP-1/cpn60 chaperonin family protein (.1) AT3G02530 173 / 1e-47 TCP-1/cpn60 chaperonin family protein (.1) AT3G13470 63 / 2e-10 Cpn60beta2 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026151 [exp] 790 / 0 AT3G18190 740 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10011401 [exp] 299 / 4e-95 AT1G24510 1012 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10006457 [exp] 298 / 1e-94 AT1G24510 1009 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10036947 [exp] 298 / 2e-94 AT1G24510 1004 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10012380 [exp] 270 / 5e-84 AT5G20890 942 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10037214 [exp] 270 / 7e-84 AT3G20050 999 / 0.0 T-complex protein 1 alpha subunit (.1) Lus10014511 [exp] 269 / 1e-83 AT5G20890 916 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10032176 [exp] 267 / 1e-82 AT5G20890 949 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10032467 [exp] 263 / 5e-81 AT3G20050 996 / 0.0 T-complex protein 1 alpha subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G042600 [exp] 981 / 0 AT3G18190 922 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.012G051300 [exp] 967 / 0 AT3G18190 942 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.010G051700 [exp] 307 / 4e-98 AT1G24510 989 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.008G182300 [exp] 302 / 3e-96 AT1G24510 1014 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.001G341100 [exp] 279 / 2e-87 AT5G20890 944 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.006G128600 [exp] 276 / 2e-86 AT5G20890 904 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.014G058500 [exp] 266 / 2e-82 AT3G20050 1006 / 0.0 T-complex protein 1 alpha subunit (.1) Potri.004G195300 [exp] 265 / 1e-81 AT3G11830 985 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.002G142700 [exp] 255 / 5e-78 AT3G20050 994 / 0.0 T-complex protein 1 alpha subunit (.1) Potri.009G157400 [exp] 254 / 2e-77 AT3G11830 929 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00118 [flax] [poplar] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Lus10008670 pacid=23161963 polypeptide=Lus10008670 locus=Lus10008670.g ID=Lus10008670.BGIv1.0 annot-version=v1.0 ATGGCGGCACCAGCAGTCAGATCCTCCAAGACGGAGTCGTACGTCGACAACAAGCGGAAGGAAGACGTCCGCCAGGCCAACATCACGGCCGCTCGAGCCG TAGCAGATGCAGTCAGGACCAGCTTGGGCCCCAAAGGAATGGACAAAATGATCTCCACCTCCAGCGGCGAGGTCATAATCACCAACGACGGCGCAACCAT TCTCAACAAGATGGGAGTTCTTCAGCCTGCTGCCAAGATGCTGGTCGAGCTCTCCAAATCGCAGGACTCGGCTGCCGGGGACGGCACGACCACCGTCGTC GTCATAGCAGGTGCGTTTCTGAAACAGTGCCTCACGCTGCTGTCGACTGGAATCCATCCCACGGTAATCTCTGACTCGCTTCATAAAACGTCTATTAAGG CTGTGGATGTGTTGACAGCTATGGCTGTGCCTGTTGAGTTGTCTGATAGGGATTCGCTTGTTAAATCTGCGAGTACTTCGTTGAACAGTAAAGTGGTGAG TCAGTATTCTACTCTTCTTGCTCCTCTAGCTGTGGATGCGGTTTTGACAGTAGTTGATCCGGAGAAGCCTAGTATGGTGGATCTTAAGGACATTAAGATT GTGAAGAAGCTAGGTGGGACTGTGGATGACACTGAGATGGTTAAAGGTTTAGTGTTTGATAAGAAAGTTAGCCATGCTTCGGGTGGGCTTACACGTGTGG AGAATGCAAAAATTGCTGTGATTCAGTTCCAGATATCGCCTCCGAAGACTGATATTGAGCAGAGCATTGTGGTGTCTGACTACACCCAGATGGATAGGAT TCTCAAGGAAGAGAGGAATTACATCTTGGGAATGATCAAGAAGATTAAGGCAACTGGTTGCAATGTGTTGTTGATTCAGAAGAGTATTCTTAGGGATGCC GTCACGGAGTTGTCATTGCATTATCTGGCTAAGGCCAAGATCTTGGTCGTTAAGGATGTCGAAAGAGACGATATTGAATTCATTACCAAGACTTTGAACT GCTTGCCAATTGCTAATATTGAGCATTTCAAAGAAGAGAAGTTGGGGCACGCTGATCTTGTTGAGGAGGTTTCCCTTGGAGAAGGCAAGATTGTGAAGAT TACCGGGATCAAAGACATGGGAAGGACTGCTACTGTTCTTGTACGAGGATCAAACTTATTGGTTCTCGATGAAGCTGAGCGGAGTTTGCACGATGCATTG TGCGTCATTAGATGCTTGGTCAACAAGCAATTCTTGATTGCAGGTGGTGGAGCTCCTGAAATTGAGCTGTCAAGGCAGCTCGGTGCATGGGCAAAGGTCC TCCATGGAATGGAAGGCTATTGCGTCAGATCATTTGCAGAGGCGCTCGAGGTTATTCCTTATACTTTGGCAGAGAATGCAGGGCTGAACCCGATAACGAT TGTGACCGAGCTGAGGAATAGGCACGCTCAAGGGGAGATCAATGCTGGCATCAACGTGAGGAAGGGACAAATCACAAACATTTTGGAGGAGAATGTTGTG CAGCCACTGCTGGTAAGCACCAGTGCCATAACTCTTGCCACAGAGTGCGTCCGAATGATTTTGAAGATCGATGATATCGTAACGGTCAGGTAA
AA sequence Show only first row Show all	>Lus10008670 pacid=23161963 polypeptide=Lus10008670 locus=Lus10008670.g ID=Lus10008670.BGIv1.0 annot-version=v1.0 MAAPAVRSSKTESYVDNKRKEDVRQANITAARAVADAVRTSLGPKGMDKMISTSSGEVIITNDGATILNKMGVLQPAAKMLVELSKSQDSAAGDGTTTVV VIAGAFLKQCLTLLSTGIHPTVISDSLHKTSIKAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLAPLAVDAVLTVVDPEKPSMVDLKDIKI VKKLGGTVDDTEMVKGLVFDKKVSHASGGLTRVENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDA VTELSLHYLAKAKILVVKDVERDDIEFITKTLNCLPIANIEHFKEEKLGHADLVEEVSLGEGKIVKITGIKDMGRTATVLVRGSNLLVLDEAERSLHDAL CVIRCLVNKQFLIAGGGAPEIELSRQLGAWAKVLHGMEGYCVRSFAEALEVIPYTLAENAGLNPITIVTELRNRHAQGEINAGINVRKGQITNILEENVV QPLLVSTSAITLATECVRMILKIDDIVTVR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18190			TCP-1/cpn60 chaperonin family ...		Lus10008670 [exp]	0	1
AT3G56150		ATTIF3C1, ATEIF...	eukaryotic translation initiat...		Lus10039984 [exp]	2.4	0.8797
AT5G60670			Ribosomal protein L11 family p...		Lus10037402 [exp]	5.2	0.8806
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Lus10037722 [exp]	5.2	0.8459
AT1G75990			PAM domain (PCI/PINT associate...		Lus10025072 [exp]	11.0	0.8267
AT1G07940			GTP binding Elongation factor ...		Lus10023174 [exp]	11.2	0.8722
AT1G62740		Hop2	Hop2, stress-inducible protein...		Lus10024597 [exp]	14.8	0.7652
AT2G07560		AHA6	H\(+\)-ATPase 6, H\(+\)-ATPase...		Lus10020149 [exp]	15.3	0.8509
AT5G09510			Ribosomal protein S19 family p...		Lus10018777 [exp]	15.7	0.8464
AT5G48760			Ribosomal protein L13 family p...		Lus10043151 [exp]	16.1	0.8647
AT3G25230		ROF1, ATFKBP62	FK506 BINDING PROTEIN 62, rota...		Lus10002338 [exp]	16.1	0.8478

Compare expression of checked genes

Lus10008670 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.