Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06990 166 / 3e-51 Protein of unknown function, DUF617 (.1) AT2G21990 163 / 4e-50 Protein of unknown function, DUF617 (.1) AT4G39610 158 / 5e-48 Protein of unknown function, DUF617 (.1) AT2G41660 133 / 6e-38 MIZ1 mizu-kussei 1, Protein of unknown function, DUF617 (.1) AT2G37880 118 / 9e-33 Protein of unknown function, DUF617 (.1) AT3G25640 115 / 1e-31 Protein of unknown function, DUF617 (.1) AT5G42680 114 / 4e-31 Protein of unknown function, DUF617 (.1.2) AT5G23100 113 / 1e-30 Protein of unknown function, DUF617 (.1) AT1G21050 110 / 1e-29 Protein of unknown function, DUF617 (.1) AT1G76610 102 / 1e-26 Protein of unknown function, DUF617 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035847 [exp] 160 / 3e-48 AT2G21990 306 / 1e-104 Protein of unknown function, DUF617 (.1) Lus10036630 [exp] 160 / 5e-48 AT4G39610 308 / 5e-105 Protein of unknown function, DUF617 (.1) Lus10031059 [exp] 134 / 2e-38 AT2G41660 258 / 4e-85 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Lus10035443 [exp] 129 / 3e-36 AT2G41660 248 / 4e-81 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Lus10021759 [exp] 123 / 2e-34 AT5G42680 254 / 3e-85 Protein of unknown function, DUF617 (.1.2) Lus10000863 [exp] 122 / 5e-34 AT5G23100 276 / 3e-93 Protein of unknown function, DUF617 (.1) Lus10019166 [exp] 121 / 1e-33 AT3G25640 258 / 2e-86 Protein of unknown function, DUF617 (.1) Lus10034386 [exp] 116 / 2e-31 AT3G25640 268 / 3e-90 Protein of unknown function, DUF617 (.1) Lus10026148 [exp] 105 / 6e-30 AT2G21990 89 / 3e-23 Protein of unknown function, DUF617 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G031900 [exp] 177 / 3e-55 AT5G06990 275 / 6e-93 Protein of unknown function, DUF617 (.1) Potri.003G193700 [exp] 174 / 2e-54 AT5G06990 328 / 6e-114 Protein of unknown function, DUF617 (.1) Potri.005G084000 [exp] 171 / 5e-53 AT2G21990 327 / 4e-114 Protein of unknown function, DUF617 (.1) Potri.006G048800 [exp] 131 / 1e-37 AT2G41660 241 / 3e-79 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Potri.014G035000 [exp] 130 / 1e-37 AT5G42680 286 / 2e-98 Protein of unknown function, DUF617 (.1.2) Potri.012G058300 [exp] 130 / 1e-37 AT5G23100 261 / 7e-88 Protein of unknown function, DUF617 (.1) Potri.002G128800 [exp] 130 / 2e-37 AT5G42680 269 / 2e-91 Protein of unknown function, DUF617 (.1.2) Potri.016G056800 [exp] 130 / 3e-37 AT2G41660 202 / 6e-64 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Potri.010G131600 [exp] 126 / 8e-36 AT3G25640 249 / 1e-82 Protein of unknown function, DUF617 (.1) Potri.015G053000 [exp] 125 / 3e-35 AT5G23100 293 / 3e-100 Protein of unknown function, DUF617 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04759 [flax] [poplar] DUF617 Protein of unknown function, DUF617
Representative CDS sequence Show only first row Show all	>Lus10008672 pacid=23161984 polypeptide=Lus10008672 locus=Lus10008672.g ID=Lus10008672.BGIv1.0 annot-version=v1.0 ATGGCTGCAGCTGTGGCTCCAATCAATCCCACCCTCCCACCAGTCCGTACGCGCACAGTCAATGGGGGCGAACGGGACTCGGATCCAGGACGGTCAGATA AACGGGACCCGGATGACGGGGACTCTGTTCGGGCACAAGAAGGCCAGAGTGAGTTTAGCGATCCAGGAGAGCCCGAGTTCGCTCCCGCTGTTGCTGCTCG AGCTGGGAATGCCGACGGGGAAGCTGCTGCAGAGCATGGGGAACGGGATGGGGAGGGTCGGGATGGAAGTCGAATGGTGAGGATCGCGATGGAATGCGAG AAGAGGATTAAGGACAAGACGAAGATGGCTGATGAACCGATCTGGACGATGTTCTGTAACGGGAGAAAGACCGGATTCGGGGTGAGGAGGGAGGCCAACG ATGAGGATCTGCAAGTTATGCAGACGCTCCGTGTGATTTCGATGGGCGCCGGAGTTATTCCGGCGAGGGACGACGGCGGCGGTGGGGGAATCCACCCGGA CGGGGAGATGGCGTATATGAGAGCGCATTTCGAGCGGGTTGTCGGGTCGAGAGACTCCGAAACCTATTATATGATGAACCCGGATGGAAATAGCGGTCCG GAGCTAAGCATTTTCTTTGTGAGGGTTTGA
AA sequence Show only first row Show all	>Lus10008672 pacid=23161984 polypeptide=Lus10008672 locus=Lus10008672.g ID=Lus10008672.BGIv1.0 annot-version=v1.0 MAAAVAPINPTLPPVRTRTVNGGERDSDPGRSDKRDPDDGDSVRAQEGQSEFSDPGEPEFAPAVAARAGNADGEAAAEHGERDGEGRDGSRMVRIAMECE KRIKDKTKMADEPIWTMFCNGRKTGFGVRREANDEDLQVMQTLRVISMGAGVIPARDDGGGGGIHPDGEMAYMRAHFERVVGSRDSETYYMMNPDGNSGP ELSIFFVRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06990			Protein of unknown function, D...		Lus10008672 [exp]	0	1
AT2G27080			Late embryogenesis abundant (L...		Lus10025548 [exp]	2.8	0.6975
AT5G44700		GSO2, EDA23	GASSHO 2, EMBRYO SAC DEVELOPME...		Lus10039958 [exp]	4.7	0.6771
AT4G35150			O-methyltransferase family pro...		Lus10012408 [exp]	13.7	0.6489
					Lus10034069 [exp]	28.4	0.6014
					Lus10011637 [exp]	34.6	0.6004
AT2G37770		ChlAKR, AKR4C9	Chloroplastic aldo-keto reduct...		Lus10021491 [exp]	51.1	0.5905
					Lus10023538 [exp]	62.0	0.5475
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10011999 [exp]	72.7	0.5748
AT1G65450			HXXXD-type acyl-transferase fa...		Lus10029920 [exp]	76.0	0.5744
AT5G11730			Core-2/I-branching beta-1,6-N-...		Lus10034348 [exp]	77.1	0.5744

Compare expression of checked genes

Lus10008672 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.