Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07010 421 / 4e-148 ATST2A ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) AT5G07000 392 / 9e-137 ATST2B ARABIDOPSIS THALIANA SULFOTRANSFERASE 2B, sulfotransferase 2B (.1) AT3G45070 303 / 8e-102 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G03760 296 / 3e-99 AtSOT12, AtSOT1, ATST1, RAR047, ST ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, sulphotransferase 12 (.1) AT5G43690 292 / 2e-97 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G03770 289 / 2e-96 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G45080 288 / 6e-96 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G13420 287 / 1e-95 SST1, ATST4B ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B, sulfotransferase 4B (.1) AT2G03750 281 / 8e-93 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G18590 273 / 4e-90 SOT17, ATSOT17, ATST5C ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026147 [exp] 650 / 0 AT5G07010 425 / 2e-149 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Lus10017878 [exp] 253 / 3e-82 AT1G18590 289 / 3e-96 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Lus10003070 [exp] 236 / 9e-76 AT3G45070 219 / 2e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10034079 [exp] 233 / 1e-74 AT3G45070 206 / 1e-64 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10041611 [exp] 234 / 2e-74 AT3G45070 239 / 9e-77 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033720 [exp] 224 / 1e-70 AT1G74100 229 / 6e-73 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10033718 [exp] 223 / 1e-70 AT1G74100 209 / 3e-65 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10031624 [exp] 219 / 4e-69 AT3G45070 209 / 2e-65 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031623 [exp] 216 / 1e-67 AT2G03760 201 / 3e-62 ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, sulphotransferase 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G193500 [exp] 473 / 1e-168 AT5G07010 446 / 1e-157 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193200 [exp] 389 / 1e-135 AT5G07010 384 / 1e-133 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193250 [exp] 388 / 3e-135 AT5G07010 395 / 9e-138 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193300 [exp] 387 / 9e-135 AT5G07010 378 / 4e-131 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193400 [exp] 387 / 1e-134 AT5G07010 393 / 6e-137 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.010G138450 [exp] 332 / 2e-113 AT3G45070 350 / 1e-120 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G138501 [exp] 330 / 2e-112 AT3G45070 351 / 3e-121 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G189066 [exp] 325 / 2e-110 AT5G07010 324 / 5e-110 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.010G138400 [exp] 323 / 1e-109 AT3G45070 337 / 1e-115 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G189100 [exp] 311 / 3e-105 AT5G07010 295 / 1e-98 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00685 [flax] [poplar] Sulfotransfer_1 Sulfotransferase domain
Representative CDS sequence Show only first row Show all	>Lus10008673 pacid=23161948 polypeptide=Lus10008673 locus=Lus10008673.g ID=Lus10008673.BGIv1.0 annot-version=v1.0 ATGCCAACATCATCATCCAACCATTTCTTGGCACCACAAGAAGAAGATGTTAGCCTAGAATGCCAAAAGTTGCTTCTTTCTCTCCCAAGGGAGAAAGGGT GGAGGACTCCTTACCTCTACAAGTTCCAAGGCTTTTGGTGCCAACCAAAGCAAATCCAAGCAATCCTAGCCTTCCAAGCCCACTTCCAAGTCAAGGACAC TGATGTCCTTGTGGCTTCCATCCCCAAGTCGGGCACCACATGGCTCAAGGCCTTGATTTTCTCCATCTCGAATCGAACCCAGTTCCCCATTCTGAACCCT ACCGACAAAACACAACAACAACCCTTACACCCGTTGCTCGTCTCAAACCCTCACGACTTGGTGCCTTTCTTCGAGTACAAGCTTTACACATCGAGTACTA CTACTCCCCAAGTCGACCTGTCAGGGCTCCCTGATCCGAGACTGTTCGCGACCCACATACCGTTTGACTCGCTCCAGGAACCGATCAGAGAATCGGGTTG CAAGATTGTGTACATATGTAGGAACCCTTTTGACACATTCATCTCGTCATGGCAATACTCCAACAAGATCAAGGGTGGGAATGCTCCACTCTTGCCCTTG GAGGAGGCATTTGAGATGTATTGCAAAGGGGTTGTTGGGTTTGGTCCATTTTGGGATCACATGTTGGGGTATTGGAAGGAGAGCCAAGAGAGGCCAGATA AAGTGTTGTTCTTCAAGTATGAAGAGATGAAAGAGGATGTTGGGTTGCACTTGAGGAAGTTGGCTGAGTTTCTTGGGTGCCCATTTTCAATGGAGGAAGA GGAGGAAGGTTTGGTGGAAGGGATTGCAAAGCTTTGTAGCTTTGAGAAGCTCAAGGAGTTGGAAGTGAACAAGAGTGGGAAGGCTATAATGAACTTTGAG AACAAGCATTTGTTCAGGAAAGGGGAGGTTGGGGATTGGGTGAATTACTTGTCCCCTGAAATGGTTGAGAAGTTGGCTCATGTCATGGAGGAGAAGTTGG GTGGGTCTGGCCTTAAGTTCAAGGTCTTCAATTCATAA
AA sequence Show only first row Show all	>Lus10008673 pacid=23161948 polypeptide=Lus10008673 locus=Lus10008673.g ID=Lus10008673.BGIv1.0 annot-version=v1.0 MPTSSSNHFLAPQEEDVSLECQKLLLSLPREKGWRTPYLYKFQGFWCQPKQIQAILAFQAHFQVKDTDVLVASIPKSGTTWLKALIFSISNRTQFPILNP TDKTQQQPLHPLLVSNPHDLVPFFEYKLYTSSTTTPQVDLSGLPDPRLFATHIPFDSLQEPIRESGCKIVYICRNPFDTFISSWQYSNKIKGGNAPLLPL EEAFEMYCKGVVGFGPFWDHMLGYWKESQERPDKVLFFKYEEMKEDVGLHLRKLAEFLGCPFSMEEEEEGLVEGIAKLCSFEKLKELEVNKSGKAIMNFE NKHLFRKGEVGDWVNYLSPEMVEKLAHVMEEKLGGSGLKFKVFNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Lus10008673 [exp]	0	1
AT1G29430			SAUR-like auxin-responsive pro...		Lus10025115 [exp]	4.2	0.9565
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Lus10040484 [exp]	4.5	0.9614
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009628 [exp]	10.4	0.9511
					Lus10025807 [exp]	12.0	0.9750
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Lus10026147 [exp]	16.6	0.8664
AT3G17130			Plant invertase/pectin methyle...		Lus10037791 [exp]	16.8	0.8638
AT4G16515		RGF6	root meristem growth factor 6,...		Lus10008506 [exp]	17.7	0.9653
					Lus10019223 [exp]	22.2	0.9646
AT3G09790		UBQ8	ubiquitin 8 (.1)		Lus10022258 [exp]	29.2	0.9597
					Lus10031379 [exp]	31.1	0.9392

Compare expression of checked genes

Lus10008673 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.