Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74320 90 / 4e-21 Protein kinase superfamily protein (.1) AT4G09760 88 / 2e-20 Protein kinase superfamily protein (.1.2.3) AT1G71697 85 / 2e-19 ATCK1 choline kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024127 [exp] 98 / 1e-23 AT1G74320 484 / 4e-171 Protein kinase superfamily protein (.1) Lus10005386 [exp] 96 / 5e-23 AT1G74320 426 / 1e-148 Protein kinase superfamily protein (.1) Lus10028728 [exp] 89 / 1e-20 AT4G09760 469 / 1e-166 Protein kinase superfamily protein (.1.2.3) Lus10028696 [exp] 87 / 3e-20 AT4G09760 464 / 8e-165 Protein kinase superfamily protein (.1.2.3) Lus10026145 [exp] 0 / 1 AT1G74320 499 / 6e-176 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G032000 [exp] 98 / 5e-24 AT1G74320 531 / 0.0 Protein kinase superfamily protein (.1) Potri.003G193000 [exp] 96 / 2e-23 AT1G74320 523 / 0.0 Protein kinase superfamily protein (.1) Potri.005G197500 [exp] 87 / 7e-20 AT4G09760 486 / 1e-172 Protein kinase superfamily protein (.1.2.3) Potri.002G063700 [exp] 83 / 1e-18 AT4G09760 481 / 2e-171 Protein kinase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF01633 [flax] [poplar] Choline_kinase Choline/ethanolamine kinase
Representative CDS sequence Show only first row Show all	>Lus10008675 pacid=23161991 polypeptide=Lus10008675 locus=Lus10008675.g ID=Lus10008675.BGIv1.0 annot-version=v1.0 ATGAACTTGATGAGGAAATCACGTTACTTGAAAATAAACTCTCCGTTGATCAACGCATTGGGTTCTGCCATAATGATTGATGAAGAAACCAGAGCCGTTT GTCATCTGCTGGTAATATATTCTCAGGACTATGAATATTCAAGCTACAACCCTGTTGCCTTTGATATAGCAAATCATTTCTGTGAGATGACTGCTGACTA CCACACAGATACACCCCATGTCGTGGACTACAGTTATTACCCTGGTGGGTACCATTTTAGAAGCTCGGTTAATGACTTCATGCTTCTTCTCTTTTACTGT TCTTCAGAGTGTCGAACTGGCATTGAAATAGGTCCGGAGATGCGCAAGCAATTTGTAGTTGCTTATCTGAGTTCTTCAGAAGCAGTCACTCCTGCCACTG CCATTGCCACGGCCGCAACAACCATTACCACTGCAACTCCCACAACCACTCTCCCTGCAGCCGCTGCTGCGACCACTACCCCTCCAGCCGCTGCTGCGAC CATTGCCACGGAAACTGCTGTTGCGACCACTCCCACGGAAACTGCTGCTGCGACCACTCACACCGAAGCTGCCATTACCAACATGACGAAGACAACCACC ACTGCAAAACGTGTGTATGGCTGTGTAATTCTATGCTAA
AA sequence Show only first row Show all	>Lus10008675 pacid=23161991 polypeptide=Lus10008675 locus=Lus10008675.g ID=Lus10008675.BGIv1.0 annot-version=v1.0 MNLMRKSRYLKINSPLINALGSAIMIDEETRAVCHLLVIYSQDYEYSSYNPVAFDIANHFCEMTADYHTDTPHVVDYSYYPGGYHFRSSVNDFMLLLFYC SSECRTGIEIGPEMRKQFVVAYLSSSEAVTPATAIATAATTITTATPTTTLPAAAAATTTPPAAAATIATETAVATTPTETAAATTHTEAAITNMTKTTT TAKRVYGCVILC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74320			Protein kinase superfamily pro...		Lus10008675 [exp]	0	1
AT2G26890		KAM2, GRV2	KATAMARI2, GRAVITROPISM DEFECT...		Lus10033078 [exp]	1.0	0.8740
					Lus10020192 [exp]	7.1	0.8130
AT3G48360		ATBT2, BT2	BTB and TAZ domain protein 2 (...		Lus10018087 [exp]	9.5	0.8314
AT1G01580		FRD1, ATFRO2, F...	FERRIC CHELATE REDUCTASE DEFEC...		Lus10039268 [exp]	10.8	0.8460
AT1G49230			RING/U-box superfamily protein...		Lus10006785 [exp]	14.1	0.8287
AT5G03810			GDSL-like Lipase/Acylhydrolase...		Lus10040791 [exp]	14.3	0.8322
AT4G16780	HD	ATHB2, HAT4, AT...	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10004377 [exp]	15.5	0.8436
AT2G23110			Late embryogenesis abundant pr...		Lus10029709 [exp]	16.3	0.8541
AT1G67070		PMI2, DIN9	PHOSPHOMANNOSE ISOMERASE 2, DA...		Lus10028480 [exp]	21.8	0.8290
AT5G45380		ATDUR3	DEGRADATION OF UREA 3, solute:...		Lus10033882 [exp]	29.4	0.8263

Compare expression of checked genes

Lus10008675 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.