Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06530 1033 / 0 ARM repeat superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039121 [exp] 3734 / 0 AT3G06530 1694 / 0.0 ARM repeat superfamily protein (.1.2.3) Lus10026144 [exp] 226 / 5e-68 AT3G06530 165 / 8e-48 ARM repeat superfamily protein (.1.2.3) Lus10008666 [exp] 112 / 1e-26 AT1G79400 162 / 3e-45 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G151500 [exp] 2238 / 0 AT3G06530 1242 / 0.0 ARM repeat superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08146 [flax] [poplar] BP28CT BP28CT (NUC211) domain PF12397 [flax] [poplar] U3snoRNP10 U3 small nucleolar RNA-associated protein 10
Representative CDS sequence Show only first row Show all	>Lus10008676 pacid=23161967 polypeptide=Lus10008676 locus=Lus10008676.g ID=Lus10008676.BGIv1.0 annot-version=v1.0 ATGGTATCCCCTCTGGACGCCCAGTTACAGTCAATTAAGTCCGTTGCACAAGTGAGTGACATTGACTCTGGGAAGAGACCCTTTACTCGGCCCTCTATTC TCTATGACGCTAAAGAAGCCGCCGACATTGGTCTCGATGTAATCCACAGTTTGGCAGCTACAGGTCTCGAAGTGCTTATAGATTTTGATGAACGGTATGC GAGCTATAAGAATGGTTTGTTTAGCATCAAAAGCAAGGATTTGGATAGAGAATTGATGCGGGAAGATGAAAATAGGCAGCTGAATGCATCAATCTCTAGC TATTTACGCTTGCTCTCTGGGCATCTTCATTTACCTGCATCACACTGGACGCTTGAATACTTGATACGCAGATACAAGATTCATATATACAATGTCGAGG AGTTGATGTTATGTGCCTTGCCATACCATGACACCCATCTTTTTGTTCGACTGGTTCAGTTAGTTGATACAAGAAATGGTAAGTGGAAGTTTCTGGATGG TGTCAAAAATTCTGGTGCTGCTCCACCTAGGAGCATATTCGTGCAGCAATCATTGCGTGATTTAGGAGTACTTGAGACTATCTGCAACTATGCATCCTCT TCGAAGAAGTTTCAGCCTTCAAAGCCTGTTATCTTCTTTTGCACAGCAGTTATAGTTGAAGCTTTGGGTTCTTCAACTGGCATCGGTAATGGCTTTGTGA AGAGAATTCTTCTGTTTGTTTTTTCTGGACTTCAGGTTGGTGGCAATGTGCCGTCTGATCTCAGGGCTGGCTCCTTGATGATTGTTGGGTTGCTAGCCAG TAAGGTTGCCTTGTCTCCTAAACTGGCTAAAAGCTTGATGCGATCAATTGCTGAAATAGCTCAGGAAGGTGCCATGGAGTCCACTGACCTGCAGTGGTCT CGCTTACCAATATTGACCATAATTAACCTTGTACAGTTGCAGTGTGTTGAAGGGATCTCAAAGAATACCTTGGAGATCCTGAAGGGAATTAGGGATATGC CTGCTATTCTTCTGGAATTGTCTAGAGAGTTCAATATAGACAGGTTCCTTGACCTGCTTGTACAATCTCTTCTTGAGTGCAGCTTATCTGATGAGTCATA CCATGATGCTCTTGCACTCATACTGGAGAAAGTTCCCATAGGAAAGTCTGTTGACCGTATGGTCTTGACCATTCTTTCGCGCTGCTTGAAACTTTCTCAA AAGAATCATGGCTCCAAGTCATCTGAAGCAGGAAGGTGGGCAAAGGATATCTTAATGGTTATTAATAAGAATTATCCAGCTGAACTTCGTCGAGCAGTTT GCATGTATCTAGAGGATACTAAAGTACAGGGCAAGAAAGAAGCCACAGTTATTGAGCTTTTGAGTGGAACACTGGAAGGAAATTTGGATTTGCCATCAGT GATCTCAGATTCAAAAATCTTGTTCGGTCTGCATCATCCTAAGGCAGCTGTACGACGTGCGACATTGTTTAGTTTAGGCACATCAGGAATTTTGAAAGAT GACAATACTGTTTCACAGAGGCTTGTAAACATTCAGGATGCTGTATTAAACCAGCTAAAGGATGAAGACCTTTCTGTAGTTCAGGCAGCTTTATCCATTG ACGGATTGTCGGACATGATTAGTTCTTATGATATTCTCAATGCTTTAGGCCTTGTGCTAGAAAGATGTACTGGGTCTCTAAGGTCAGGTCCGTCTGAGGA AAATTCCTTAGCTTGTGATGTTGCTGTTTCGTTTATCACAATTGTCATCTCCGCCTCCCACAACGATGCGTATATGTCGAAGAAACTTGCCTCAATGCTG TTCCCACTGCTTCTGATATCTCCCAAGACACTGAGGCTGAATTTAAAGGTACTGCAATTAGCCAAAGAGCTAAAATGGGATCTGTATCACAATCTTCCAA ATGTCACAGCTGAAGAGGTGAAACTGGAACATGAGATCATTTCTTCTATTAATCTGAAGATTGTCAGCAACCTGTGTGAAGCTTTTTCAATGGATCCGAC TAAGCATATGCCCTGGCTTATTGAGAATTGCTCTAACTCAGATCTTTCAAGGATGCTAACTTTCCTAGTAGTGATGGAGTCATTTTTTAAGTCAAAGAAT GAGATCAAGTCTTCATCAGCACTCTTTGAAGCGTGTTTTTCTTTTCTAAGAGCTGAATCGGAGGCGTTGGTGGGCAATGTTTCCATGCTTGAGTTCAATA AAGAAGTGCTTCAGTGGGACTGCAGAAAGTTCCTTGATCAGCTGTTTGCCATTCCTCTTTCGAAGCTGAATACAAATACTTTGATTTGTGTCTTTTGGAG ATTACTAGATGCGCTCCCAGTGGCTGCTTCGGATGGTTGTAAGGAGGAGGTGACTAGAAAACTCAGGGACTTGTTTGTATTTTTTGCAACTTCTCCGGCA AAAAATGTTTTCAGGGAACATCTTTTCCGCCTTGTTACAAACTGCAGCATGTCTCCTATTGATTTTCTGTTGGGTTTTTTCACGGAAGAAGATGTTCCTC TTCCTGTTCAAATGGAGATCCTCCACTCGTTTTCACATCTTTGTGTTGAGGCAGATGATAGATTGACATTTCAACTCCTTGCCAACTTCCCTTTGGTCCT TGTTCCACTTTCTTCTGAAGACCAGGAATTGAGAGTTACTGCGGTAGGCTGCATTGAAGCGCTGTCTGGACTGTCTCGTCGCGTTGACCTATTGAGCAAG AAAAATGGAAACAATGGCAATTGGATAAGTTTTGTTGTTGACCTTTTGGGCTTCATCGTCCAGCAGAAGAGGCTCATACTGTCGGACAAAAACTTCTTAC CATCGTTCTTTACATCTTTGCTTGGATCATGTTCTGGTGGTCTTCTGGTTCCTCGAAGTGTTGAACAGAGATTCAACGAATCAACAAAAGAGCAGATCCT TGCATTTATATTGGGTTATGGCCTTCAACTGCCTACATTTGCCAAGGTGATGATTGTATCTTTGCTCAAAGGTCTGGGCAATAGGATAATGCAAAACAAA GATGCTGAAGAACTGTTGTCACAACTTCTAGAGAGGCGCAGACAAATTTATATGCTGCGAAATCAGTCGAGTAAAAAGTTATCCATAAGCGAAATCAAGA TCATGTGCCTTCTACTAGAGATCTGTGCCACAAGAACATCAACCGCAGGGCACCCTTGTGAAGAGTATTTGTTCAATGCTTTGCATTTGAATGGGAGCGC TTCAGGGGAACTAGCCATTGTAGAACCTTGCACGACTGTTTTGCAGAGTATAGATTGCCAATATTACTTGGAGATGACACCTGATAAGCAGCGGCTTCTG TTCCGTGAGCTTTTATGTTTGTCCCGGCATGCTGATGGGCAGTTACAGAATGCTAGCAGGGCGGCGTTCCTGCGATTAAATATTTCTCACTCCACCGTGG CCCAGACACTTGATTTCTTCCTGAAGTCAGAAAGTCATAGAACTGGGTCATCACATGGGAAGAAGAAGATGAAGAAAGAAACACACCAAATGTCCATCTC TGATCACGACCTCCTTCGTGAAGAGGGAACATTGTTATCTTCATTAAGCTCGCTCCTTGAGTTTTTAATACTGAAGAAAGATGTGGCTAAGAGGGAGTTC CTCATAGGCCCTCTTTTTCAGCTTCTTGAGAGTATCTTTTTTGATGAAGAGATGCTAGCTCTAGGTGGTTCATCTAGCATTTCCCAGACAGTGTCGGCCA CAATTCTGAACATTCAGCACACTTTGCTAATAGTATTGGAAGATATTATTTCGTCACTTGAATGTGGTGGTGTCTCATCAAAGGATTACGGAGCAGTTGA AGTAAAGGTTCTGATAAGATGTGCCCGTTCTGCAAAAGATGGAACTACTCGGAACCTTATTTTCTCGCTTTTGTCTTCTGTTGGAAAAGTCATCCCAGAC AAGATTATGCCACATATATTGGATATACTTGTAGTGATTGGGGAATCAACAGTTACACAGACAGACAGTCACTCGCAGCATGTGTTTGAACAACTTGTAT CTGCTATCATTCCCCCCTGGCTCGGCGAGACTGGAAACATTGAAAAATTGCTCCAGATTTTCATCAATGTGATGCCTGATATTGCTGAGCACCGGAGGTT GTCACTTGTTGTGTACCTCTTAAGGGTACTTGGAGAACAAAGTAGCTTGGCTTCCTTACTTCTACTTCTTTTCCAGTCCCTTATTTCTCGGAAAGGATTC TCTTCATCCTGCAGTGGACAAAGTCTTGATGATTGTGAGGGTTCTATTTGGAGAGAATGGGAGTATTCTTTTGCCGTGCGGATATTTGAACAGTACTCGA GTACTATATGGCTTCCATCCCTTGTCATGCTTCTAAAGCGGATAGAAGCAGATGGTTATAATCAAGAACTTCCAGTAAAAGTGCTATTTGCGATGGAATT CATTTTACACAAGTTGCAAGATCCCGAGTTCACTCTGAGGCTTCAGTCAAGTGAGGGATTTAATAACATACAGGGTACACTCCAGGAACTAATGGAACAT GCTGTTGCTACTTCACTACTTGTTGACGTAAGAAGAAAGAAATTTCATATTCCCACTGTAATGAAAAAAGAATTGAAAGATCGGGCTCATGCTGTCTTGA GACTTATTAGAACAGCAATGGCGCCTTCTGCATATTTCAGAGGCATGGTCAGTTTATTGGGGAATTCGGATGGGAATGTGCAGAAAAAGGCTCTTGGACT TCTCTGTGAGACCCTTAAGGACCGTGACTCTGTCAAAGCAAAGGGTAAGGGGAAAGAACGTCACATAGGTGTGAGTTTGTGGCTTCATATGGACAAGGCA TCAGTTAAATCTCTTAACAAAATGTGTTTAGAGATTGTTGGGATGGTTAATGGTACGGCAGAGGAATCAGATGAAACTCTGAAGATCTCAGCAGTTTCTA CGCTGGAAGTGTTGGCCCGTAGCTTCCCTTCCAATCAATCCATCTTTAGTGTATGCCTTCCTTTTGTGTCGAAAAGCATTGTGTCATCTAACTTGGGCTT GTCTTCTTGCTCTCTTCGGACTACTGGTGCTTTTATCGAGGTGATCGGGCTAACAGCGTTAGCTGAACTCCCTGCCATAATTGGAAACATGATGGAGAAA TCTCGCGAGGTTTCTGCTGGAGTATCCATTTCCGGGGAGGCTTTTATGCATGCAATCCTTGTTACATTGGAGCAAGTAATAGACAAACTTGGCGGTTTCC TGAACCCATATCTCGAAGACATTCTGAGACTATTGGTGATTCATCCAATGTACACATCTGTATCCCATGAAAAATTGAAGCTGAGAGCTGATATAGTACG AGGTCTACTCACTGAAAGAATTCCTATGCGGCTGGCTCTTCCTCCTTTGCTGAAGATATATGCTGATGCTGTTGAGTCTGGAGATTCAAGCGTGTCTATT GCGTTTGAGATTCTAGCTAGACTGGTTCAGGCAATGGATAAACCATCTGTCCGGGGTTACTATGAAAAGATTTTCGACCTTTGCTTGTCTGCTTTGGATC TTCGTCATCAACACCCTGCATCAATTCGGAACGTTGATGCTGTCGAAGAAACTGTGATTAATGCTACCGTTGCCCTGACTATGAAGTTGACAGAGACAAT GTTCAAGCCTCTCTTGATACGAAGTATTGAATGGGCAGAACCTGCTGATGACAATAGTTCCAGCACGAATGTGGACAGGGCCATAGCTTTCTATGGATTG ATCAACAAACTTACCGATAGCCATCGGTCTCTTTTTGTTCCCTACTTCAAGTACTTGCTTGACGCCTGTATATGCCATCTCACCGATCTTCCGAGAAATG CCAATATTACTCGAAAGAAGAAGAAAGCAAAGAATCTGGACGATGGCAAGGACGGTGAAGTCTCGCTCGAGAGCTGGCAGATCAGGGCATTGACTCTTTT GAAACCCATCGTATCACAATTCACCATAGATCCGCCAGCTTCACTTCACAAACATCCGAGCGTGCCATCAGTTAACGAAGTTGATGACCTGCTGGTGGGC TGCATTGGCCAAATGGCTGTGACTTCAGGATCTGATCTTCTATGGAAGCCATTGAACCACGAGGTACTGATGCAAACTCAAAGCAGTAAGGTAAGGCCGA AACGTCTAGGACTGAGGACAGTGAAGTACCTGGTTGATAATCTGAAGGAAGAATACATGGTATTGCTGCCGGAGACTGTGCCGTTCCTCGCTCATTTGCT GGAGGATAATGACGTAAGAAGTCTTGCACAGGAAGTTGCGAAGGAGATGGAGGTGGTGAGTGGCGAAAGCCTGCAGGAATACCTTTCTTGA
AA sequence Show only first row Show all	>Lus10008676 pacid=23161967 polypeptide=Lus10008676 locus=Lus10008676.g ID=Lus10008676.BGIv1.0 annot-version=v1.0 MVSPLDAQLQSIKSVAQVSDIDSGKRPFTRPSILYDAKEAADIGLDVIHSLAATGLEVLIDFDERYASYKNGLFSIKSKDLDRELMREDENRQLNASISS YLRLLSGHLHLPASHWTLEYLIRRYKIHIYNVEELMLCALPYHDTHLFVRLVQLVDTRNGKWKFLDGVKNSGAAPPRSIFVQQSLRDLGVLETICNYASS SKKFQPSKPVIFFCTAVIVEALGSSTGIGNGFVKRILLFVFSGLQVGGNVPSDLRAGSLMIVGLLASKVALSPKLAKSLMRSIAEIAQEGAMESTDLQWS RLPILTIINLVQLQCVEGISKNTLEILKGIRDMPAILLELSREFNIDRFLDLLVQSLLECSLSDESYHDALALILEKVPIGKSVDRMVLTILSRCLKLSQ KNHGSKSSEAGRWAKDILMVINKNYPAELRRAVCMYLEDTKVQGKKEATVIELLSGTLEGNLDLPSVISDSKILFGLHHPKAAVRRATLFSLGTSGILKD DNTVSQRLVNIQDAVLNQLKDEDLSVVQAALSIDGLSDMISSYDILNALGLVLERCTGSLRSGPSEENSLACDVAVSFITIVISASHNDAYMSKKLASML FPLLLISPKTLRLNLKVLQLAKELKWDLYHNLPNVTAEEVKLEHEIISSINLKIVSNLCEAFSMDPTKHMPWLIENCSNSDLSRMLTFLVVMESFFKSKN EIKSSSALFEACFSFLRAESEALVGNVSMLEFNKEVLQWDCRKFLDQLFAIPLSKLNTNTLICVFWRLLDALPVAASDGCKEEVTRKLRDLFVFFATSPA KNVFREHLFRLVTNCSMSPIDFLLGFFTEEDVPLPVQMEILHSFSHLCVEADDRLTFQLLANFPLVLVPLSSEDQELRVTAVGCIEALSGLSRRVDLLSK KNGNNGNWISFVVDLLGFIVQQKRLILSDKNFLPSFFTSLLGSCSGGLLVPRSVEQRFNESTKEQILAFILGYGLQLPTFAKVMIVSLLKGLGNRIMQNK DAEELLSQLLERRRQIYMLRNQSSKKLSISEIKIMCLLLEICATRTSTAGHPCEEYLFNALHLNGSASGELAIVEPCTTVLQSIDCQYYLEMTPDKQRLL FRELLCLSRHADGQLQNASRAAFLRLNISHSTVAQTLDFFLKSESHRTGSSHGKKKMKKETHQMSISDHDLLREEGTLLSSLSSLLEFLILKKDVAKREF LIGPLFQLLESIFFDEEMLALGGSSSISQTVSATILNIQHTLLIVLEDIISSLECGGVSSKDYGAVEVKVLIRCARSAKDGTTRNLIFSLLSSVGKVIPD KIMPHILDILVVIGESTVTQTDSHSQHVFEQLVSAIIPPWLGETGNIEKLLQIFINVMPDIAEHRRLSLVVYLLRVLGEQSSLASLLLLLFQSLISRKGF SSSCSGQSLDDCEGSIWREWEYSFAVRIFEQYSSTIWLPSLVMLLKRIEADGYNQELPVKVLFAMEFILHKLQDPEFTLRLQSSEGFNNIQGTLQELMEH AVATSLLVDVRRKKFHIPTVMKKELKDRAHAVLRLIRTAMAPSAYFRGMVSLLGNSDGNVQKKALGLLCETLKDRDSVKAKGKGKERHIGVSLWLHMDKA SVKSLNKMCLEIVGMVNGTAEESDETLKISAVSTLEVLARSFPSNQSIFSVCLPFVSKSIVSSNLGLSSCSLRTTGAFIEVIGLTALAELPAIIGNMMEK SREVSAGVSISGEAFMHAILVTLEQVIDKLGGFLNPYLEDILRLLVIHPMYTSVSHEKLKLRADIVRGLLTERIPMRLALPPLLKIYADAVESGDSSVSI AFEILARLVQAMDKPSVRGYYEKIFDLCLSALDLRHQHPASIRNVDAVEETVINATVALTMKLTETMFKPLLIRSIEWAEPADDNSSSTNVDRAIAFYGL INKLTDSHRSLFVPYFKYLLDACICHLTDLPRNANITRKKKKAKNLDDGKDGEVSLESWQIRALTLLKPIVSQFTIDPPASLHKHPSVPSVNEVDDLLVG CIGQMAVTSGSDLLWKPLNHEVLMQTQSSKVRPKRLGLRTVKYLVDNLKEEYMVLLPETVPFLAHLLEDNDVRSLAQEVAKEMEVVSGESLQEYLS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06530			ARM repeat superfamily protein...		Lus10008676 [exp]	0	1
AT3G11964			RNA binding;RNA binding (.1)		Lus10029327 [exp]	1.0	0.9736
AT2G05120			Nucleoporin, Nup133/Nup155-lik...		Lus10001170 [exp]	1.7	0.9722
AT2G34357			ARM repeat superfamily protein...		Lus10041232 [exp]	2.0	0.9731
AT3G55160			unknown protein		Lus10015366 [exp]	2.4	0.9668
AT5G51660		CPSF160, ATCPSF...	cleavage and polyadenylation s...		Lus10031692 [exp]	2.8	0.9714
AT4G30150			unknown protein		Lus10012174 [exp]	3.0	0.9599
AT5G40480		EMB3012	embryo defective 3012 (.1)		Lus10022271 [exp]	3.9	0.9691
AT5G51660		CPSF160, ATCPSF...	cleavage and polyadenylation s...		Lus10031111 [exp]	4.6	0.9624
AT1G05830		SDG30, ATX2	SET DOMAIN PROTEIN 30, trithor...		Lus10025508 [exp]	5.1	0.9445
AT2G34357			ARM repeat superfamily protein...		Lus10021944 [exp]	5.7	0.9506

Compare expression of checked genes

Lus10008676 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.