Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21240 789 / 0 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 (.1) AT1G51680 787 / 0 AT4CL1, 4CL.1, 4CL1 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) AT1G65060 669 / 0 4CL3 4-coumarate:CoA ligase 3 (.1.2) AT3G21230 648 / 0 4CL5 4-coumarate:CoA ligase 5 (.1) AT4G05160 386 / 2e-128 AMP-dependent synthetase and ligase family protein (.1) AT1G20510 346 / 9e-113 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT1G62940 345 / 2e-112 ACOS5 acyl-CoA synthetase 5 (.1) AT1G20480 328 / 2e-105 AMP-dependent synthetase and ligase family protein (.1) AT4G19010 325 / 1e-104 AMP-dependent synthetase and ligase family protein (.1) AT5G63380 310 / 7e-99 AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026143 [exp] 1019 / 0 AT1G51680 838 / 0.0 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) Lus10024123 [exp] 905 / 0 AT3G21240 835 / 0.0 4-coumarate:CoA ligase 2 (.1) Lus10005390 [exp] 902 / 0 AT1G51680 827 / 0.0 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) Lus10016135 [exp] 387 / 6e-129 AT4G05160 791 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10013831 [exp] 350 / 3e-114 AT4G05160 654 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10026544 [exp] 339 / 5e-110 AT4G05160 642 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10025842 [exp] 339 / 8e-110 AT1G62940 793 / 0.0 acyl-CoA synthetase 5 (.1) Lus10021431 [exp] 333 / 6e-108 AT4G05160 803 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10037934 [exp] 331 / 2e-106 AT1G20510 462 / 2e-157 OPC-8:0 CoA ligase1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G036900 [exp] 805 / 0 AT3G21240 768 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.006G169700 [exp] 803 / 0 AT3G21240 802 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.003G188500 [exp] 783 / 0 AT3G21240 741 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.018G094200 [exp] 773 / 0 AT3G21240 807 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.019G049500 [exp] 697 / 0 AT1G65060 781 / 0.0 4-coumarate:CoA ligase 3 (.1.2) Potri.001G055700 [exp] 382 / 4e-126 AT1G62940 786 / 0.0 acyl-CoA synthetase 5 (.1) Potri.002G012800 [exp] 363 / 2e-119 AT1G20510 769 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.005G248500 [exp] 348 / 1e-113 AT1G20510 795 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.010G230200 [exp] 343 / 1e-111 AT1G20510 478 / 7e-164 OPC-8:0 CoA ligase1 (.1.2) Potri.008G031500 [exp] 337 / 3e-109 AT1G20510 466 / 3e-159 OPC-8:0 CoA ligase1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10008677 pacid=23161969 polypeptide=Lus10008677 locus=Lus10008677.g ID=Lus10008677.BGIv1.0 annot-version=v1.0 ATGGAGTCCAACCATAACCAAACTCCGGCGACGTCGGTTGGTGAGGAATTCATTTTCCGGTCGAAATTGCCGGATATCGACATCCCCAACCACCTCCCTC TCCACTCCTACATCTTCCAGAACATCTCCAACCACGCCACCCGCCCCTGCCTCATCAATTCCGTCACCGGAGAAGTCTACACCTACGCCGACGTCCACCT CACCGCTAGACGAGTCGCTTCCGGGCTTGACAAGCTGGGGATACGTCAGGGGGGTGTGATAATGCTCTTGCTCCCGAATTGCCCCCAATTCGTCCTCGCC TTCCTTGGCGCTTCCTTCCGGGGAGCAATCGCCACCGCCGCCAACCCGTTCTTCACCCCCGCTGAGGTCGCCAAGCAGGCCAAGGCCTCCGGCGCGAAAT TGGTCATCACTCAGGCAGCCTTCGCGGATAAACTCAAGGATCTGGCTGCGGACGATTCGCTTAAGGTGATGTGCGTCGATTCACCTCCTGATTGGTGCTT GCATTTCTCCCAATTGACCGAATCCGATGACTCGGCGGTGGAGGAGGTAGAGATCAGCTCTGATGACGTGGTGGCGCTCCCGTACTCATCGGGAACCACC GGGTTGCCGAAGGGAGTGATGCTGACTCACAAGGGGCTGGTGACGAGCGTGGCGCAGCAGGTGGACGGCGAGAATCCGAATCTGTACTTCAACTCGGAGG ATGTGATACTGTGCGTTCTGCCGATGTTCCACATCTACGCGCTGAACTCGATCATGCTGTGCGGGTTGCGGGTCGGGGCGGCGATCCTGATCATGCCGAA GTTCGAGATCGGACCTCTGCTGGAGCTGATCCAGAGGTACCGGGTCACCATAGCGCCGATGGTTCCTCCGGTGGTGCTGTCGATTGCGAAGTCGCCAGAT ACGGAGAAGTACGACCTGTCGTCGATTCGGATGTTGAAATCCGGTGCGGCGCCGTTGGGGAAGGAACTCGAAGACGCCGTCGGGAACAAGTTCCCGAACG CGCGACTCGGCCAGGGATACGGAATGACAGAGGCCGGACCAGTGCTGTCGATGTGCTTGGCATTCGCCAAGGAACCATTCGAAATCAAAGCAGGTTCCTG TGGTACCGTCGTCAGGAATGCAGAAATGAAGATCGTCGATCCTGATACAGGATCCTCCCTTCCCAGAAACCAGCGTGGAGAGATTTGCATCAGAGGCCAT CAAATCATGAAGGGATACCTGAATGACCCGGAATCCACATCAAGAACGATAGACCAGCAAGGGTGGCTACACACAGGGGACATTGGCTATATCGACGACG ATGACGAGCTATTCATCGTGGATCGGTTGAAGGAGATCATCAAGTACAAAGGATTCCAGGTTGCCCCTGCTGGACTTGAAGCCTTGCTCATTGCTCACCC TGAGATCTCCGATGCAGCTGTTGTTGGGATAAAAGACGAGCTAGCCGGGGAAATCCCAGTAGCATTCGTGGTGAAATCGGCAAATTCTGAGCTTACAGAG GATCGAATCAAGCAGTACATCTCTAGACAGGTGGTGTTCTACAAGAGACTAAGCCGGGTGTTCTTCAGGGAGACCATTCCAAAGGCACCCTCTGGGAAAA TTTTGAGGAAGAACTTGAGAGCTGAACTGGCAAATGGTTTCCAGAACTGA
AA sequence Show only first row Show all	>Lus10008677 pacid=23161969 polypeptide=Lus10008677 locus=Lus10008677.g ID=Lus10008677.BGIv1.0 annot-version=v1.0 MESNHNQTPATSVGEEFIFRSKLPDIDIPNHLPLHSYIFQNISNHATRPCLINSVTGEVYTYADVHLTARRVASGLDKLGIRQGGVIMLLLPNCPQFVLA FLGASFRGAIATAANPFFTPAEVAKQAKASGAKLVITQAAFADKLKDLAADDSLKVMCVDSPPDWCLHFSQLTESDDSAVEEVEISSDDVVALPYSSGTT GLPKGVMLTHKGLVTSVAQQVDGENPNLYFNSEDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEIGPLLELIQRYRVTIAPMVPPVVLSIAKSPD TEKYDLSSIRMLKSGAAPLGKELEDAVGNKFPNARLGQGYGMTEAGPVLSMCLAFAKEPFEIKAGSCGTVVRNAEMKIVDPDTGSSLPRNQRGEICIRGH QIMKGYLNDPESTSRTIDQQGWLHTGDIGYIDDDDELFIVDRLKEIIKYKGFQVAPAGLEALLIAHPEISDAAVVGIKDELAGEIPVAFVVKSANSELTE DRIKQYISRQVVFYKRLSRVFFRETIPKAPSGKILRKNLRAELANGFQN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51680		AT4CL1, 4CL.1, ...	ARABIDOPSIS THALIANA 4-COUMARA...		Lus10008677 [exp]	0	1
AT5G54800		ATGPT1, GPT1	ARABIDOPSIS GLUCOSE 6-PHOSPHAT...		Lus10011155 [exp]	1.0	0.9735
AT4G39230			NmrA-like negative transcripti...		Lus10042313 [exp]	1.4	0.9732
AT5G54800		ATGPT1, GPT1	ARABIDOPSIS GLUCOSE 6-PHOSPHAT...		Lus10043060 [exp]	2.4	0.9570
AT3G17390		MAT4, SAMS3, MT...	S-ADENOSYLMETHIONINE SYNTHETAS...		Lus10038044 [exp]	4.5	0.9548
AT4G01850		AtSAM2, SAM-2, ...	S-adenosylmethionine synthetas...		Lus10010070 [exp]	4.6	0.9497
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Lus10023361 [exp]	7.1	0.9455
AT1G22410			Class-II DAHP synthetase famil...		Lus10035923 [exp]	7.1	0.9546
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10012280 [exp]	8.7	0.9095
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Lus10019841 [exp]	9.2	0.9519
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Lus10041651 [exp]	9.5	0.9475

Compare expression of checked genes

Lus10008677 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.