Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026135 [exp] 247 / 2e-80 ND / Lus10041676 [exp] 80 / 6e-17 ND / Lus10028987 [exp] 77 / 3e-16 ND / Lus10041677 [exp] 77 / 4e-16 ND / Lus10018646 [exp] 69 / 9e-14 ND / Lus10008679 [exp] 64 / 6e-12 ND / Lus10010387 [exp] 56 / 3e-09 ND / Lus10039442 [exp] 54 / 6e-08 ND / Lus10027774 [exp] 48 / 2e-06 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008678 pacid=23161987 polypeptide=Lus10008678 locus=Lus10008678.g ID=Lus10008678.BGIv1.0 annot-version=v1.0 ATGCTTGAAACAGACTCGCGGTTTGTGATGGACGCCAACTCCATGTTCATATGCGGCACTCCCACCGGCGCCGTGGTAGTGTTCGACGCCGGTAGCGATC TGAACTCCAAGTCCTACTCCAGAAATGACTGGAAGGTCCTCGCTGCAGCAATCGGCACTAACAAACCAATCACCAAGTGTGAAACCATCCCGTGCGGGAC GAAGGTGTACAGAGCGGTAGAAATATTCGGGGTAGTAATCAAAGGGGACAGCTTGGACAGGTTGTCCGAGGAGCTTTTTATGTCGCAGGTTCTGGTCAAC CCCGACGGCTACCAGGTAAGATATTCCGGAGAGGGCGACTATGGTGGGTTCGACGTGTCTAAGAACTGGTTGGTGAAGGCCAACAACATGTTCGGGTGGA TGAGATACGGGGTGAAGTCACCAGAGGGTAGGACCGGTACTGTGTGGAACAGGTACGATGTGCGCGGTGGGGAAACGGTGGTGGATTACGTGGCGGCGGA GGAGAAGGCGAAGTTGGCTGGGTTAGAGCTGGAGAAACAGAGGAGAGAGTTAAGGGAATGGGAGAGGAAGGCGGCGGAGAAGGAAGAGATTTTGGGGCAT TATAAGCTGATTCTTGAGGAGAAAATTGAGATTATGAAGGAGATGGAAAATGGGAAGAATCGACTGAAGGAAGTTTTGGAAGAGAAAGTTAGAGTGAATG AGGAACAGAGAAGGGTTATTAAGGAGAAGGAAGTAGAGATTCAAGGTCTGATGATGGTGAAATTGGTTAATGGTGGTGATGGTCAGTTGAAGGAGAAAGT GATGGTGGAAAACGATGATGATGATTTCAAGGCAGCCATTGTATCCTTTACGAGTTCTTGCAAGGATGATCTCAACAGGGCAATCGGTGCCACTAACAGG GTTTTGTTTGTTAATCTGGTTGTTGCTTTCTTACTTTTAGGCTTACTTTCGTTTCGTCTTGTTTGA
AA sequence Show only first row Show all	>Lus10008678 pacid=23161987 polypeptide=Lus10008678 locus=Lus10008678.g ID=Lus10008678.BGIv1.0 annot-version=v1.0 MLETDSRFVMDANSMFICGTPTGAVVVFDAGSDLNSKSYSRNDWKVLAAAIGTNKPITKCETIPCGTKVYRAVEIFGVVIKGDSLDRLSEELFMSQVLVN PDGYQVRYSGEGDYGGFDVSKNWLVKANNMFGWMRYGVKSPEGRTGTVWNRYDVRGGETVVDYVAAEEKAKLAGLELEKQRRELREWERKAAEKEEILGH YKLILEEKIEIMKEMENGKNRLKEVLEEKVRVNEEQRRVIKEKEVEIQGLMMVKLVNGGDGQLKEKVMVENDDDDFKAAIVSFTSSCKDDLNRAIGATNR VLFVNLVVAFLLLGLLSFRLV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10008678 [exp]	0	1
					Lus10004635 [exp]	1.7	0.8171
AT3G14250			RING/U-box superfamily protein...		Lus10000412 [exp]	2.4	0.7534
					Lus10009381 [exp]	5.1	0.7692
AT3G14250			RING/U-box superfamily protein...		Lus10026104 [exp]	8.1	0.6629
AT5G37150			P-loop containing nucleoside t...		Lus10035775 [exp]	9.0	0.6800
					Lus10006375 [exp]	13.4	0.6950
AT5G45840			Leucine-rich repeat protein ki...		Lus10007281 [exp]	14.7	0.6816
AT4G35420		TKPR1, DRL1	tetraketide alpha-pyrone reduc...		Lus10006141 [exp]	17.0	0.6792
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10024577 [exp]	19.4	0.7006
AT2G38430			unknown protein		Lus10030356 [exp]	19.6	0.5959

Compare expression of checked genes

Lus10008678 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.