Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04940 218 / 2e-64 SUVH1 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) AT1G73100 212 / 2e-62 SDG19, SUVH3 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) AT2G33290 153 / 7e-41 SDG3, ATSUVH2, SUVH2 SET DOMAIN-CONTAINING PROTEIN 3, SU(VAR)3-9 homolog 2 (.1) AT4G13460 144 / 1e-37 SET22, SDG22, SUVH9 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) AT2G24740 144 / 2e-37 SUVH8, SDG21 SU\(VAR\)3-9 HOMOLOG 8, SET domain group 21 (.1) AT5G47150 127 / 1e-33 YDG/SRA domain-containing protein (.1) AT1G17770 129 / 2e-32 SDG17, SUVH7 SET DOMAIN PROTEIN 17, SU(VAR)3-9 homolog 7 (.1) AT2G35160 129 / 2e-32 SGD9, SUVH5 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) AT2G22740 120 / 2e-29 SDG23, SUVH6 SET DOMAIN PROTEIN 23, SU(VAR)3-9 homolog 6 (.1), SU(VAR)3-9 homolog 6 (.2) AT5G13960 120 / 2e-29 SDG33, KYP, SUVH4 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008681 [exp] 311 / 6e-100 AT1G73100 738 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10026137 [exp] 305 / 2e-97 AT1G73100 757 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10026136 [exp] 285 / 7e-95 AT4G02450 122 / 1e-34 HSP20-like chaperones superfamily protein (.1.2) Lus10029470 [exp] 272 / 7e-85 AT1G73100 762 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10000340 [exp] 186 / 3e-56 AT4G02450 120 / 5e-34 HSP20-like chaperones superfamily protein (.1.2) Lus10024119 [exp] 177 / 9e-55 AT3G03773 121 / 2e-36 HSP20-like chaperones superfamily protein (.1.2) Lus10014457 [exp] 147 / 5e-39 AT2G33290 444 / 2e-149 SET DOMAIN-CONTAINING PROTEIN 3, SU(VAR)3-9 homolog 2 (.1) Lus10023714 [exp] 146 / 2e-38 AT4G13460 759 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Lus10011011 [exp] 129 / 2e-32 AT2G35160 620 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G036800 [exp] 247 / 1e-75 AT1G73100 796 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.003G188700 [exp] 242 / 1e-73 AT1G73100 806 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.006G027600 [exp] 190 / 4e-54 AT5G04940 583 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.016G025300 [exp] 189 / 1e-53 AT5G04940 561 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.010G064300 [exp] 160 / 2e-43 AT4G13460 772 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Potri.008G173100 [exp] 159 / 1e-42 AT4G13460 750 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Potri.005G199700 [exp] 137 / 2e-38 AT4G02450 127 / 9e-37 HSP20-like chaperones superfamily protein (.1.2) Potri.002G061500 [exp] 135 / 6e-38 AT4G02450 123 / 4e-35 HSP20-like chaperones superfamily protein (.1.2) Potri.003G083100 [exp] 133 / 1e-33 AT2G35160 676 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Potri.002G237950 [exp] 117 / 3e-28 AT5G13960 709 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [flax] [poplar] HSP20 PF04969 [flax] [poplar] CS CS domain CL0178 [flax] [poplar] PUA PF02182 [flax] [poplar] SAD_SRA SAD/SRA domain
Representative CDS sequence Show only first row Show all	>Lus10008680 pacid=23161977 polypeptide=Lus10008680 locus=Lus10008680.g ID=Lus10008680.BGIv1.0 annot-version=v1.0 ATGGGAAGCAATCGACCTGCCAAGGCTTCCCCAAGTTGCGCCATCTTGAATAGCAATAATGTAAGGACGAACTCTAGGAAGAGAACGGGAGTGGTTCCTG GAGTTGAGGTTGGTGATATCTTTTTTTTACGTATGGAGATGTGTTTGGTTGGGTTGCATACCCAGACCATGGCTGGCATAGATTATATGATCGTAAGAGG TGATTTAGAGGAGGAGCCACTGGCTACAAGCATTGTTTCATCTGGCTACTATGACAATGCTGCAAATGATTCAGATGTTCTTATCTACAGTGGCCATGGA GGTAACTCCATCAGCAAAAAGGGAGCAACTGATCAGAAACTTGAGAGGGGTAATCTTGCGCTGGAGAGGAGTCTACGCAGGGGAAGCCAGGTCCGTGTCA TCCGAGGTGTGAAAGATGGCAACACTATAGCGTCAAAGGTTTATGTGTATGATGGTCTTTACACGATTAAGGAGTCGTGGATGGAGAAGGCCAATACTGG TTGCAATATATTCAACCGACACCCAATTTTAAAGTGGGCACAGAGAAGTGATAAAATCTTTTTAACTTTGGAGTTGCCAGACGCTAAAGATGCCAAAATC AAGCTTGAACCAGAAGGAAAATTCATATTTTCGGCCAATAAAGATGGGGTTGCATATGATTTGGATCTTGAGCTGTTCGACAAAGTCAATGTGGAGGAGA GCAAGTACAACGTTGGTGTGAGAAGCATTGTATATGTCATTGAGAAAGCTGAGAGTAAGTGGTGGACTCGGTTGATTAAACAGGAAGGAAAGGCTCCTGC TTTCCTAAAAGTCGACTGGGATAAATGGGTTGACGAAGATGAGGAAAATGGTAAAGCAGCATTTGGTTCCTATGTTGGCGGTGCTGATGCTGGTGGTAGC ATGAACTTTGATGGCATGGATTTCTCAAAGTTTGGCATGGGTGGAGGCATGCCCGGTATGGGTGGCATGCCCGGAATGGGAGGCATGCCCGGTATGGGGG GAATGGGAGGCATGATGCCTGGAATGGGTGGTATGCCAGGAATGGGAGGGGATTTCGGTGATTTCAACATGCCGGAAGATGACGATGAGGACGATGATGA AGAGGAGGTAACAAAACCAGAAGCTAATGAGGCAGAAGGAACCAGTAAATCTGCAGCCCCCGAGGATGTGAAGGATGTGAAGGCTTGA
AA sequence Show only first row Show all	>Lus10008680 pacid=23161977 polypeptide=Lus10008680 locus=Lus10008680.g ID=Lus10008680.BGIv1.0 annot-version=v1.0 MGSNRPAKASPSCAILNSNNVRTNSRKRTGVVPGVEVGDIFFLRMEMCLVGLHTQTMAGIDYMIVRGDLEEEPLATSIVSSGYYDNAANDSDVLIYSGHG GNSISKKGATDQKLERGNLALERSLRRGSQVRVIRGVKDGNTIASKVYVYDGLYTIKESWMEKANTGCNIFNRHPILKWAQRSDKIFLTLELPDAKDAKI KLEPEGKFIFSANKDGVAYDLDLELFDKVNVEESKYNVGVRSIVYVIEKAESKWWTRLIKQEGKAPAFLKVDWDKWVDEDEENGKAAFGSYVGGADAGGS MNFDGMDFSKFGMGGGMPGMGGMPGMGGMPGMGGMGGMMPGMGGMPGMGGDFGDFNMPEDDDEDDDEEEVTKPEANEAEGTSKSAAPEDVKDVKA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04940		SUVH1	SU(VAR)3-9 homolog 1 (.1), SU(...		Lus10008680 [exp]	0	1
AT4G02450			HSP20-like chaperones superfam...		Lus10026136 [exp]	1.0	0.8762
AT3G25545			unknown protein		Lus10029095 [exp]	1.7	0.8619
AT1G21720		PBC1	proteasome beta subunit C1 (.1...		Lus10004885 [exp]	2.0	0.8622
AT2G44050		COS1	coronatine insensitive1 suppre...		Lus10018133 [exp]	3.0	0.7676
AT1G80860		ATPLMT	ARABIDOPSIS PHOSPHOLIPID N-MET...		Lus10026087 [exp]	3.5	0.7846
AT2G27020		PAG1	20S proteasome alpha subunit G...		Lus10041296 [exp]	4.0	0.8018
AT3G18940			clast3-related (.1)		Lus10021018 [exp]	6.0	0.6938
AT4G05400			copper ion binding (.1.2)		Lus10027072 [exp]	7.7	0.7875
AT2G41600			Mitochondrial glycoprotein fam...		Lus10042042 [exp]	8.5	0.7059
AT5G51910	TCP	TCP19	TCP family transcription facto...		Lus10002963 [exp]	9.3	0.6977

Compare expression of checked genes

Lus10008680 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.