Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04940 701 / 0 SUVH1 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) AT1G73100 686 / 0 SDG19, SUVH3 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) AT1G17770 477 / 2e-160 SDG17, SUVH7 SET DOMAIN PROTEIN 17, SU(VAR)3-9 homolog 7 (.1) AT2G24740 456 / 4e-151 SUVH8, SDG21 SU\(VAR\)3-9 HOMOLOG 8, SET domain group 21 (.1) AT2G35160 348 / 2e-109 SGD9, SUVH5 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) AT4G13460 342 / 2e-108 SET22, SDG22, SUVH9 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) AT2G33290 325 / 3e-102 SDG3, ATSUVH2, SUVH2 SET DOMAIN-CONTAINING PROTEIN 3, SU(VAR)3-9 homolog 2 (.1) AT2G22740 321 / 3e-99 SDG23, SUVH6 SET DOMAIN PROTEIN 23, SU(VAR)3-9 homolog 6 (.1), SU(VAR)3-9 homolog 6 (.2) AT5G13960 295 / 4e-91 SDG33, KYP, SUVH4 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) AT2G05900 169 / 3e-47 SUVH10, SDG11 SU\(VAR\)3-9 HOMOLOG 10, SET domain protein 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026137 [exp] 1096 / 0 AT1G73100 757 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10029470 [exp] 955 / 0 AT1G73100 762 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10011011 [exp] 337 / 5e-103 AT2G35160 620 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10031984 [exp] 324 / 6e-101 AT5G13960 764 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10040150 [exp] 325 / 1e-100 AT2G35160 568 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10001011 [exp] 330 / 3e-100 AT2G35160 615 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10023714 [exp] 318 / 2e-99 AT4G13460 759 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Lus10008680 [exp] 308 / 9e-99 AT5G04940 216 / 8e-64 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Lus10041515 [exp] 315 / 6e-98 AT5G13960 792 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G036800 [exp] 792 / 0 AT1G73100 796 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.003G188700 [exp] 780 / 0 AT1G73100 806 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.016G025300 [exp] 597 / 0 AT5G04940 561 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.006G027600 [exp] 597 / 0 AT5G04940 583 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.003G083100 [exp] 367 / 1e-114 AT2G35160 676 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Potri.008G173100 [exp] 346 / 1e-109 AT4G13460 750 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Potri.010G064300 [exp] 341 / 9e-108 AT4G13460 772 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Potri.002G237950 [exp] 317 / 9e-99 AT5G13960 709 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.014G143900 [exp] 292 / 4e-89 AT5G13960 706 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.003G162801 [exp] 276 / 3e-82 AT5G13960 529 / 8e-180 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05033 [flax] [poplar] Pre-SET Pre-SET motif PF00856 [flax] [poplar] SET SET domain CL0178 [flax] [poplar] PUA PF02182 [flax] [poplar] SAD_SRA SAD/SRA domain
Representative CDS sequence Show only first row Show all	>Lus10008681 pacid=23161964 polypeptide=Lus10008681 locus=Lus10008681.g ID=Lus10008681.BGIv1.0 annot-version=v1.0 ATGGAAGGAGTTTCAACAGCAGCCTTCAATTCTGCTCGTAGTAGTACAGTTTCCTTGGATAAATCAAGGGTTTTGGATGTGAAACCCCTCCGTACTCTGG TTCCCGTGTTTCCATCAAGTCCTCAAGGCCCTCCATTTGTCTCTTCACCTCCATTTGGTCCATACCCACCAGGGTTTGCTCCATTTTATCCCTTTTCTCC ACAGGACACCAACCAGGAACCCCAAACTCCAACACCACTTCGTTCATTCCGAGCTCCTGAACCCATCTCGGTCGCTAATGGAGGAGGTGGTCACTCCGAT CCACCTACAAAGCGTCGGCCGGGACGACCTGCCAAGGCTTCCCCAACTCAGAAGAAGGTAAAGAGCGCCCCGGATGACTTTTTGCTGCCTGCTCCAAGTA GTAGTTTTGTGTTGGGGATCAGTCCTGCTCAAAAAGAGGATGGTGATAGGAGCATTGTTGTTAGTCTTCTGATGAGGTTTGAAGCTCTAAGGAGAAAAAT TAGCCAGCTAGAGGATGCGAACGACACGAATCATGGGAGTAGGAAGGGTGCTCACTTAAAAGCTTGCGCTACCTTGATGGGCAACAATGTAAGGACGAAC TCTAGGAAGAGAACGGGAGTGGTTCCTGGAGTTGAGGTTGGTGATATCTTTTTTTTACGTATGGAGATGTGTTTGGTTGGGTTGCATACCCAGACCATGG CTGGCATAGATTATATGCTCGTAAGAGGTGATTTAGAGGAAGAACCACTGGCTACAAGCATTGTTTCATCTGGTAGCTATGACAATGCTGCAGATGATGC GGATGTTCTTATCTATAGTGGCCATGGAGGTAACTCCACCAGCAAAAAGGAAGCATCTGATCAGAAACTTGAGAGAGGTAATCTTGCGTTGGAGAGGAGT CTACGCAGGGGAAGCCAGGTCCGTGTCATCCGAGGTGTGAAAGATGGCAACACTATAGCGTCAAAGGTTTATGTGTATGATGGTCTTTACACGATTAAGG AGTCATGGATGGAGAAGGCCAATACGGGCTGCAATATATTCAAATACAAGCTTGTTAGGATGCCTGGTCAAGCTGATGCCTTTTCTGTCTGGAAATCAGT TGAGAGATGGAAAGAGGGAGGAGTTTCTTCCAGAGTGGGGTTGATTCTTCCCGACCTCACTTCGGGGGCCGAAAGTTTACCTGTTTCACTTGTAAATGAT GTTGACCAAGAAAAGGGGCCTGCTCACTTCACATATCTTGCTTCTGTGAAGTACTCCAAGTCATTTAAACTATCTCAGCCATCTTTAGGGTGCAACTGCC GTAATGCATGCCGGGCAAATGATGAAAAATGCTCTTGCATGAGATTAAATGGCAACATGAGCCCCTATATTGGTAACGGGACTCTTGTTAGTAGGAAGCC ATTAGTCTATGAATGTGGTCCTACATGTCCATGCCTTGCTAACTGCAAAAACCGTGTGTCTCAAACTGGTTTGAAAGTTCACCTAGAAGTTTTCAAGACA AAGGATAGAGGTTGGGGTCTAAGGTCATGGGATCCGATTCGTGCTGGTGGCTTTATATGTGTATATGCCGGTGAAGCGACAGAGAAGATTAAATCGGCGG AAAATGGTGAAGCAAGTGATGGAGATGACTATATCTTTGATACAACCCGTGCATATGGTTCGTTCAGGTGGAATTGCGAACCTGGGTTAGTAGAAGAGGA TCTTAACGACAGTGATGAAGAGTATGCTATTCCGTATCCACTCGTGATAAATGCCAAGAATGTTGGCAATGTAGCTCGGTTTATGAATCACAGTTGTGAG CCCAACACATTCTGGCAGGCAGTTATGTACGAGAACAACAACGAAACTCATATCAATATCGCTTTCTTTGCAATGAGACATATTCCGCCAATGACGGAGT TGACCTTCGATTACGGGGTATCCGGTGCTCAGGGAAGGAAGAAGTGTTTATGTGGATCGTCAAGTTGTAAAGGCTATTTTGGCTGA
AA sequence Show only first row Show all	>Lus10008681 pacid=23161964 polypeptide=Lus10008681 locus=Lus10008681.g ID=Lus10008681.BGIv1.0 annot-version=v1.0 MEGVSTAAFNSARSSTVSLDKSRVLDVKPLRTLVPVFPSSPQGPPFVSSPPFGPYPPGFAPFYPFSPQDTNQEPQTPTPLRSFRAPEPISVANGGGGHSD PPTKRRPGRPAKASPTQKKVKSAPDDFLLPAPSSSFVLGISPAQKEDGDRSIVVSLLMRFEALRRKISQLEDANDTNHGSRKGAHLKACATLMGNNVRTN SRKRTGVVPGVEVGDIFFLRMEMCLVGLHTQTMAGIDYMLVRGDLEEEPLATSIVSSGSYDNAADDADVLIYSGHGGNSTSKKEASDQKLERGNLALERS LRRGSQVRVIRGVKDGNTIASKVYVYDGLYTIKESWMEKANTGCNIFKYKLVRMPGQADAFSVWKSVERWKEGGVSSRVGLILPDLTSGAESLPVSLVND VDQEKGPAHFTYLASVKYSKSFKLSQPSLGCNCRNACRANDEKCSCMRLNGNMSPYIGNGTLVSRKPLVYECGPTCPCLANCKNRVSQTGLKVHLEVFKT KDRGWGLRSWDPIRAGGFICVYAGEATEKIKSAENGEASDGDDYIFDTTRAYGSFRWNCEPGLVEEDLNDSDEEYAIPYPLVINAKNVGNVARFMNHSCE PNTFWQAVMYENNNETHINIAFFAMRHIPPMTELTFDYGVSGAQGRKKCLCGSSSCKGYFG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73100		SDG19, SUVH3	SET DOMAIN PROTEIN 19, SU(VAR)...		Lus10008681 [exp]	0	1
AT3G12640			RNA binding (RRM/RBD/RNP motif...		Lus10015696 [exp]	1.0	0.9186
AT4G04950		AtGRXS17	Arabidopsis thaliana monothiol...		Lus10011188 [exp]	2.8	0.9023
AT3G16620		ATTOC120	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10005063 [exp]	6.0	0.8736
AT3G16620		ATTOC120	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10027835 [exp]	6.7	0.8777
AT1G36990			unknown protein		Lus10042697 [exp]	8.1	0.8993
AT3G01160			unknown protein		Lus10028412 [exp]	9.3	0.8267
AT1G51350			ARM repeat superfamily protein...		Lus10027364 [exp]	9.4	0.8696
AT1G65440		GTB1	global transcription factor gr...		Lus10011344 [exp]	9.5	0.8986
AT4G31160		DCAF1	DDB1-CUL4 associated factor 1 ...		Lus10012331 [exp]	11.2	0.8786
AT3G12640			RNA binding (RRM/RBD/RNP motif...		Lus10037701 [exp]	12.3	0.8911

Compare expression of checked genes

Lus10008681 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.