Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02340 147 / 2e-44 alpha/beta-Hydrolases superfamily protein (.1) AT4G15960 134 / 1e-38 alpha/beta-Hydrolases superfamily protein (.1) AT3G05600 130 / 1e-37 alpha/beta-Hydrolases superfamily protein (.1) AT4G15955 124 / 1e-35 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT3G51000 101 / 1e-26 alpha/beta-Hydrolases superfamily protein (.1) AT2G26740 100 / 2e-26 ATSEH soluble epoxide hydrolase (.1) AT2G26750 99 / 1e-25 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008683 [exp] 209 / 1e-68 AT4G02340 428 / 1e-151 alpha/beta-Hydrolases superfamily protein (.1) Lus10008684 [exp] 162 / 3e-50 AT4G02340 369 / 1e-128 alpha/beta-Hydrolases superfamily protein (.1) Lus10026141 [exp] 159 / 7e-49 AT4G02340 446 / 6e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10004439 [exp] 149 / 7e-45 AT4G02340 384 / 3e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10009859 [exp] 137 / 2e-41 AT4G02340 349 / 6e-122 alpha/beta-Hydrolases superfamily protein (.1) Lus10010293 [exp] 135 / 1e-39 AT4G02340 476 / 1e-170 alpha/beta-Hydrolases superfamily protein (.1) Lus10020663 [exp] 135 / 1e-39 AT3G05600 416 / 1e-146 alpha/beta-Hydrolases superfamily protein (.1) Lus10026139 [exp] 128 / 3e-39 AT4G15960 115 / 6e-32 alpha/beta-Hydrolases superfamily protein (.1) Lus10029878 [exp] 132 / 1e-38 AT3G05600 425 / 3e-150 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G127200 [exp] 154 / 3e-47 AT4G02340 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G202700 [exp] 152 / 2e-46 AT4G02340 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G081000 [exp] 137 / 4e-40 AT4G02340 455 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G013500 [exp] 134 / 3e-39 AT3G05600 425 / 2e-150 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010800 [exp] 127 / 1e-36 AT4G15960 413 / 1e-144 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010700 [exp] 125 / 1e-35 AT4G15960 404 / 2e-141 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010900 [exp] 124 / 3e-35 AT4G15960 412 / 3e-144 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G023400 [exp] 108 / 3e-30 AT3G05600 238 / 8e-79 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G018900 [exp] 103 / 1e-27 AT3G51000 454 / 9e-162 alpha/beta-Hydrolases superfamily protein (.1) Potri.011G048000 [exp] 66 / 2e-13 AT3G51000 219 / 2e-69 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008682 pacid=23161928 polypeptide=Lus10008682 locus=Lus10008682.g ID=Lus10008682.BGIv1.0 annot-version=v1.0 ATGTCTTCATTTCATCCGATCATATCATCTGTCTCGATTCTCCATGAGGCTGAGTTTGCCGAGGTCGGGTTCGGAGGGTCGCCGGATCCTCCCTGTTTGC CGTCGTGGTTGACCCAGGAGGATGTTGAATATTATGCTGGCAAGTTTGACAAGACCGGGTTCACCGGCGGACTCAACTACTACCGAGCTATTGATCTGAC ATGGGAGACGATGGCGGCCTGGACGGGGGCGAAAGTGATGGTGCCGGCGAAGTTCGTTGCAGGGGAGTTAGACTTGACGCTGAAGTTTCCCGGGACGGAG GAATACATCAATGGCGGAGGGTTCAAGGAATATGTGCCGCTGCTGGAGGAGGTTATTCTGCTGAAAGATGTGGGTCACTTTCGCATCAAAAGAGAGCCTC GATGA
AA sequence Show only first row Show all	>Lus10008682 pacid=23161928 polypeptide=Lus10008682 locus=Lus10008682.g ID=Lus10008682.BGIv1.0 annot-version=v1.0 MSSFHPIISSVSILHEAEFAEVGFGGSPDPPCLPSWLTQEDVEYYAGKFDKTGFTGGLNYYRAIDLTWETMAAWTGAKVMVPAKFVAGELDLTLKFPGTE EYINGGGFKEYVPLLEEVILLKDVGHFRIKREPR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10008682 [exp]	0	1
AT1G65450			HXXXD-type acyl-transferase fa...		Lus10029920 [exp]	2.6	0.9739
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10007909 [exp]	3.5	0.9687
AT5G11730			Core-2/I-branching beta-1,6-N-...		Lus10034348 [exp]	3.7	0.9739
					Lus10015636 [exp]	4.1	0.8897
AT2G23945			Eukaryotic aspartyl protease f...		Lus10019960 [exp]	4.4	0.8759
AT5G37060		ATCHX24	cation/H+ exchanger 24, ARABID...		Lus10031852 [exp]	5.3	0.9633
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10011999 [exp]	5.9	0.9587
					Lus10011637 [exp]	6.5	0.9538
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10029377 [exp]	7.9	0.9504
AT1G52190			Major facilitator superfamily ...		Lus10008539 [exp]	8.0	0.9424

Compare expression of checked genes

Lus10008682 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.