Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02340 416 / 1e-146 alpha/beta-Hydrolases superfamily protein (.1) AT3G05600 342 / 1e-117 alpha/beta-Hydrolases superfamily protein (.1) AT4G15960 340 / 3e-116 alpha/beta-Hydrolases superfamily protein (.1) AT2G26740 310 / 4e-105 ATSEH soluble epoxide hydrolase (.1) AT4G15955 305 / 1e-103 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT2G26750 301 / 9e-102 alpha/beta-Hydrolases superfamily protein (.1) AT3G51000 253 / 9e-83 alpha/beta-Hydrolases superfamily protein (.1) AT4G37470 54 / 2e-08 alpha/beta-Hydrolases superfamily protein (.1) AT4G33180 50 / 7e-07 alpha/beta-Hydrolases superfamily protein (.1) AT3G24420 48 / 4e-06 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026141 [exp] 454 / 4e-162 AT4G02340 446 / 6e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10026140 [exp] 418 / 1e-148 AT4G02340 329 / 2e-113 alpha/beta-Hydrolases superfamily protein (.1) Lus10004439 [exp] 411 / 4e-145 AT4G02340 384 / 3e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10010293 [exp] 406 / 8e-143 AT4G02340 476 / 1e-170 alpha/beta-Hydrolases superfamily protein (.1) Lus10008684 [exp] 375 / 2e-131 AT4G02340 369 / 1e-128 alpha/beta-Hydrolases superfamily protein (.1) Lus10020663 [exp] 348 / 5e-120 AT3G05600 416 / 1e-146 alpha/beta-Hydrolases superfamily protein (.1) Lus10029878 [exp] 348 / 5e-120 AT3G05600 425 / 3e-150 alpha/beta-Hydrolases superfamily protein (.1) Lus10037577 [exp] 344 / 3e-118 AT4G02340 384 / 6e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10006827 [exp] 342 / 2e-117 AT4G02340 380 / 8e-133 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G127200 [exp] 427 / 3e-151 AT4G02340 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G202700 [exp] 418 / 1e-147 AT4G02340 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G081000 [exp] 381 / 1e-132 AT4G02340 455 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G013500 [exp] 367 / 2e-127 AT3G05600 425 / 2e-150 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010800 [exp] 367 / 2e-127 AT4G15960 413 / 1e-144 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010900 [exp] 363 / 5e-126 AT4G15960 412 / 3e-144 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010700 [exp] 346 / 3e-119 AT4G15960 404 / 2e-141 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G018900 [exp] 271 / 6e-90 AT3G51000 454 / 9e-162 alpha/beta-Hydrolases superfamily protein (.1) Potri.011G048000 [exp] 209 / 2e-65 AT3G51000 219 / 2e-69 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G023400 [exp] 199 / 3e-63 AT3G05600 238 / 8e-79 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10008683 pacid=23161944 polypeptide=Lus10008683 locus=Lus10008683.g ID=Lus10008683.BGIv1.0 annot-version=v1.0 ATGGAGAAAATAGAGCACACAACGGTATCGGTAAACGGTGTAAACATCCACGTGGCATCCGTCGGCGCCGGAACCCGGACAATCCTTTTCGTCCACGGAT TCCCACAGCTATGGTACGTGTGGCGACACCAGCTCATCTCCCTCTCCTCCCTTGGCTACCGATGCATCGCTCCCGACCTCCGCGGCTATGGCGATACGAC GGTCACTTCTCCTTCCACCGCTGCCTACACTTCGTTCCACGTCATCGGAGACCTCATCGCCCTCCTCGATGCTCTTAAAATCGAACAGGTCTTCCTCGTG GGCCACGACTTCGGGGCTATCATCGCATGGCATTTCTGTCTTTTCAGGCCCGACAGGGTCAAGGCTTTGGTCAATACCAGTGTTCCGTTTCGCCCCATGT CCAACTCGCCGGTGACGCCGATGCAGGGCGCGAGAGCCGTGCTGGGAGACGACTTCTACATGTGTAGATTCCAGCAACCCGGGGAGGTCGAGGCTGAGTT CGCCAAGGTCGATACGGGGAAGCTCCTTGTGAAGTTTCTCGGGTACCGGAGCCCCGACCCGCCTTGCGTTCCTAAGGAGCTCGGGTTCGGAGGGTGGCCG GATCCTCCCTGCTTGCCGTCGTGGCTGACCAAGGAGGACGTTGACTATTATGCCGGCAAGTTCGACAAGACCGGGTTCACCGGTGCACTCAATTACTACC GAGCTATTGATCTGACATGGGAGATGATGGCGGCCTGGGCGGGGGCGAAAGTGACGGTGCCGACGAAGTTCATCGCAGGGGAGCTAGACCTGACGCTGAA GTTCCCAGGAACAGAGGAATACATTAATGGCGGAGGGTTTAAAGAATACGTGCCGTTGCTGGAGGAGGTAGTTTTGCTGAAAGATGTGGGTCACTTTCTC ATTGAAGAGAGCCCAGAGGAAATCACCAAGCACATTTACGATTTCTTCAACAAGTTCTAA
AA sequence Show only first row Show all	>Lus10008683 pacid=23161944 polypeptide=Lus10008683 locus=Lus10008683.g ID=Lus10008683.BGIv1.0 annot-version=v1.0 MEKIEHTTVSVNGVNIHVASVGAGTRTILFVHGFPQLWYVWRHQLISLSSLGYRCIAPDLRGYGDTTVTSPSTAAYTSFHVIGDLIALLDALKIEQVFLV GHDFGAIIAWHFCLFRPDRVKALVNTSVPFRPMSNSPVTPMQGARAVLGDDFYMCRFQQPGEVEAEFAKVDTGKLLVKFLGYRSPDPPCVPKELGFGGWP DPPCLPSWLTKEDVDYYAGKFDKTGFTGALNYYRAIDLTWEMMAAWAGAKVTVPTKFIAGELDLTLKFPGTEEYINGGGFKEYVPLLEEVVLLKDVGHFL IEESPEEITKHIYDFFNKF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10008683 [exp]	0	1

Compare expression of checked genes

Lus10008683 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.