Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02340 368 / 2e-128 alpha/beta-Hydrolases superfamily protein (.1) AT4G15960 293 / 5e-98 alpha/beta-Hydrolases superfamily protein (.1) AT3G05600 287 / 2e-96 alpha/beta-Hydrolases superfamily protein (.1) AT4G15955 257 / 4e-85 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT2G26740 252 / 6e-83 ATSEH soluble epoxide hydrolase (.1) AT2G26750 251 / 1e-82 alpha/beta-Hydrolases superfamily protein (.1) AT3G51000 207 / 3e-65 alpha/beta-Hydrolases superfamily protein (.1) AT1G52510 47 / 8e-06 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026141 [exp] 548 / 0 AT4G02340 446 / 6e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10004439 [exp] 416 / 1e-147 AT4G02340 384 / 3e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10008683 [exp] 391 / 2e-137 AT4G02340 428 / 1e-151 alpha/beta-Hydrolases superfamily protein (.1) Lus10010293 [exp] 339 / 5e-117 AT4G02340 476 / 1e-170 alpha/beta-Hydrolases superfamily protein (.1) Lus10020663 [exp] 315 / 3e-107 AT3G05600 416 / 1e-146 alpha/beta-Hydrolases superfamily protein (.1) Lus10029878 [exp] 313 / 1e-106 AT3G05600 425 / 3e-150 alpha/beta-Hydrolases superfamily protein (.1) Lus10037577 [exp] 300 / 1e-101 AT4G02340 384 / 6e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10006827 [exp] 291 / 5e-98 AT4G02340 380 / 8e-133 alpha/beta-Hydrolases superfamily protein (.1) Lus10026140 [exp] 286 / 4e-97 AT4G02340 329 / 2e-113 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G127200 [exp] 380 / 2e-133 AT4G02340 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G202700 [exp] 375 / 3e-131 AT4G02340 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G081000 [exp] 342 / 8e-118 AT4G02340 455 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010700 [exp] 312 / 2e-106 AT4G15960 404 / 2e-141 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G013500 [exp] 308 / 6e-105 AT3G05600 425 / 2e-150 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010800 [exp] 308 / 7e-105 AT4G15960 413 / 1e-144 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010900 [exp] 305 / 2e-103 AT4G15960 412 / 3e-144 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G018900 [exp] 224 / 6e-72 AT3G51000 454 / 9e-162 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G023400 [exp] 175 / 3e-54 AT3G05600 238 / 8e-79 alpha/beta-Hydrolases superfamily protein (.1) Potri.011G048000 [exp] 172 / 1e-51 AT3G51000 219 / 2e-69 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008684 pacid=23161937 polypeptide=Lus10008684 locus=Lus10008684.g ID=Lus10008684.BGIv1.0 annot-version=v1.0 ATGGAGAAGATAGAGCACACGACGGTGGCGACGAACGGCATAAACATGCACGTGGCGTCCATCGGAAACGGCCCGGCCACCATCCTGTTCCTCCACGGCT TCCCGGAGCTATGGTACACGTGGCGCCACCAGATGCTGTCCTTGTCATCCCAGGGCTTCCGCTGCATCGCTCCCGACCTCCGCGGCTACGGCGACACCGA CGTCCCTTCCGGCGGCGCCGACAAGTACACGTCGGTCCACGACGTCATTCCACGTGGTCGGCCGGACAGAATCAAGGCGCTGGTTAATACCAGCGTGCCG TTCATGCCACGTCACCCGAAGATCTCTCTTCTCGGCGGGTTGAGGGCGGTGTTCGGCGACGACTTCTATATGTGCCGGTTTCAGGATCCCGGAGGGGCGG AAGAAGACTTCGGGGCCGTGGAGACAGAGAAGCTAATGGCCAAAATACTGTCGTCGAGGAACTCGGACCCGCCGTGCTTGCCCAAAGAGATAGGTTGGAG AGCGATACCCGATCCCCCGTCTCTCCCGAACTGGCTCTCCGAACAAGACATCCAATACTTTGCCTCCAAATTCAATAAGACCTCCTTCACCGGCGCTCTC AACTACTACCGCGCTATCGATCTGACATGGGAGCTGATGGGGCCATGGACCGGGGCGAAAGTTCTGGTGCCGACTAAGTTCATAGTAGGGGAGCTCGACC TGACATTGAAGTTTCCTAGGATGGACGAGTATGTCGTCAAGGGCGGAATGAAACGAGACGTGCCATTGCTCGAAGAAGTGGTGGTGTTGAAGGACGTGGC TCACTTCCTCAACCAAGAGAGCCCCGACGAGGTCACCAAGCACATTTACGACTTCTTCAAGGACAAGTAA
AA sequence Show only first row Show all	>Lus10008684 pacid=23161937 polypeptide=Lus10008684 locus=Lus10008684.g ID=Lus10008684.BGIv1.0 annot-version=v1.0 MEKIEHTTVATNGINMHVASIGNGPATILFLHGFPELWYTWRHQMLSLSSQGFRCIAPDLRGYGDTDVPSGGADKYTSVHDVIPRGRPDRIKALVNTSVP FMPRHPKISLLGGLRAVFGDDFYMCRFQDPGGAEEDFGAVETEKLMAKILSSRNSDPPCLPKEIGWRAIPDPPSLPNWLSEQDIQYFASKFNKTSFTGAL NYYRAIDLTWELMGPWTGAKVLVPTKFIVGELDLTLKFPRMDEYVVKGGMKRDVPLLEEVVVLKDVAHFLNQESPDEVTKHIYDFFKDK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10008684 [exp]	0	1
AT1G10380			Putative membrane lipoprotein ...		Lus10036702 [exp]	66.3	0.4269
					Lus10027052 [exp]	117.4	0.4548
AT2G07180			Protein kinase superfamily pro...		Lus10008546 [exp]	270.8	0.3715

Compare expression of checked genes

Lus10008684 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.