Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12610 157 / 7e-43 RAP74, ATRAP74 transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors (.1.2) AT2G27950 47 / 4e-05 Ring/U-Box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026142 [exp] 519 / 2e-172 AT3G11440 370 / 5e-115 myb domain protein 65 (.1) Lus10017289 [exp] 465 / 7e-160 AT4G12610 270 / 1e-85 transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G009100 [exp] 390 / 2e-130 AT4G12610 289 / 8e-93 transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors (.1.2) Potri.016G015100 [exp] 380 / 9e-127 AT4G12610 202 / 1e-59 transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors (.1.2) Potri.004G217700 [exp] 43 / 0.0007 AT2G27950 533 / 2e-177 Ring/U-Box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF05793 [flax] [poplar] TFIIF_alpha Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
Representative CDS sequence Show only first row Show all	>Lus10008686 pacid=23161922 polypeptide=Lus10008686 locus=Lus10008686.g ID=Lus10008686.BGIv1.0 annot-version=v1.0 ATGACGATCGATCTTGTTCTGAAGCCGTCTTGTAGGTGCGGATCCACCTCGAATTTGTATGGAAGCAATTGCAAGCACATGACTTTGTGCTTGGACTGCG GCAAAAAGATGGCCGAATCAGGCGCCAAATGCTACGACTGTGGCGCCCCTGTCACTCGATTGATTCGAGAATATAACGTTCGGGCTAGTCCTAGCAGTGA CAAGAACTATTTTATTGGTAGGTTCATGGGTGGTCTGCCAAGTTTTTCGAAGAAGAAAAGTGCTGAGAATAAATGGTCTATTCATAAAGAAGGGCTGCAA GGCCGCATGCTGTCTGAAAATTTGAGGGAGAGGTACAAGAATAAACCCTGGCTGTTGGAGGATGAAACTGGCCAGCATCGTTTTCACGGCCAAATGGAAG GCTCACAGTCTGTAACCTATTATCTGTTAATGGTACAAGGAAAAGAGTTTGCTGCTATTCCTGCTGGTTCCTGGTACAACTTCAACAAGGTTGCACAATA TAAGCAACTGACGCTGGAGGAAGCAGAAGAGAAGATGAAGAACAGGAGAAAGACGGCAGAAGGATATGAAAGATGGATGATGAAAGCAGCAGCTGATGGA CCTGCTGCATTTGGTGTTAAGGATAGTCTTGATGACGCAGATGCTGGTACAGGTGGTACCAGGGGACGCAAAAAAGCATCGGGTGACAATGACGATGGCA ATGTATCTGACAAGGGAGAGGAAGATGAGGATGATGAAGCTTCTCGGAAGAGCAGACTTGGACTAGCCAAAAGAGGTGGAGATGATGATGAAGAAGGAAA GAGAGGAGGTGACCATGATGATGATGATGATATTGAGAAGGGTGATGATTGGGAGCATGAAGAAATATTTACTGATGATGACGAAGCAGTTGGAAGTGAT CATGAGTTACCGGAAGAGTTGGCTCCTGCTCCTCCAGAAATAAAGCAGGATGATGAAGACGAGGATGAAGAGAATGAGGAAGGAAAGTTGAGTTCGTCTG GAAAGGAGTTGAAGAAGTTACTCGGGAAAGCTGCCGGGCTCAGTGATTCTGATGGTGAAGATGACGACGATGATGATCTGCCACCAAAAAAAAAGGAGGC TGTTAAGGAGGAGCCAAGTGACAATAATACTCCATCAAAAACAACAGCTGCTGGTTCGACAAAGGGAAATGCAACAACTTCAAAGTCAGGAAAGGGAAAG AGAAAAGCCGATGATTCCAAAGCCTCTAATTCTGCAACTCCCAAGAAGACCAAGGCAGACGAATCGAAACCTAGTGTAAAAGAAGAAGGCACACCTAATA GTAAGGGTAATTCGTCCAGCAAAGTAGCACCTCCATTAGCAAAAGCTAGTTCAGCGCCTGCTTCTGGCCCTGTCACTGAAGAGGAGATAAAGGCTGTTCT ATTGGAGGGTGGGCCTATCACTACGCAGGAACTTGTTGGCAGGTTTAAGTCACGTCTAAAATGCTCTGAGGATAAGAGAGCGTTTGCGGATGTATTGAAG AAAATTTCAAAGATTCAGAAGAATGCTGGCGGTGGAGCCAGCTATGTTGTGTTGAGAGGCAAATAA
AA sequence Show only first row Show all	>Lus10008686 pacid=23161922 polypeptide=Lus10008686 locus=Lus10008686.g ID=Lus10008686.BGIv1.0 annot-version=v1.0 MTIDLVLKPSCRCGSTSNLYGSNCKHMTLCLDCGKKMAESGAKCYDCGAPVTRLIREYNVRASPSSDKNYFIGRFMGGLPSFSKKKSAENKWSIHKEGLQ GRMLSENLRERYKNKPWLLEDETGQHRFHGQMEGSQSVTYYLLMVQGKEFAAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTAEGYERWMMKAAADG PAAFGVKDSLDDADAGTGGTRGRKKASGDNDDGNVSDKGEEDEDDEASRKSRLGLAKRGGDDDEEGKRGGDHDDDDDIEKGDDWEHEEIFTDDDEAVGSD HELPEELAPAPPEIKQDDEDEDEENEEGKLSSSGKELKKLLGKAAGLSDSDGEDDDDDDLPPKKKEAVKEEPSDNNTPSKTTAAGSTKGNATTSKSGKGK RKADDSKASNSATPKKTKADESKPSVKEEGTPNSKGNSSSKVAPPLAKASSAPASGPVTEEEIKAVLLEGGPITTQELVGRFKSRLKCSEDKRAFADVLK KISKIQKNAGGGASYVVLRGK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12610		RAP74, ATRAP74	transcription activators;DNA b...		Lus10008686 [exp]	0	1
AT1G18470			Transmembrane Fragile-X-F-asso...		Lus10042969 [exp]	1.0	0.9680
AT1G18470			Transmembrane Fragile-X-F-asso...		Lus10032471 [exp]	2.4	0.9623
AT2G37150			RING/U-box superfamily protein...		Lus10040389 [exp]	2.8	0.9647
AT1G22620		ATSAC1	suppressor of actin 1, Phospho...		Lus10014827 [exp]	4.5	0.9517
AT5G45360			F-box family protein (.1)		Lus10022369 [exp]	4.7	0.9449
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10007727 [exp]	6.6	0.9534
AT3G11440	MYB	AtMYB65	myb domain protein 65 (.1)		Lus10026142 [exp]	7.7	0.9428
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10018663 [exp]	11.2	0.9351
AT3G03610			ELMO/CED-12 family protein (.1...		Lus10009523 [exp]	13.0	0.9429
AT3G26100			Regulator of chromosome conden...		Lus10006242 [exp]	14.8	0.9451

Compare expression of checked genes

Lus10008686 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.