Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15660 197 / 8e-62 ATGRX4 A. THALIANA GLUTAREDOXIN 4, glutaredoxin 4 (.1.2) AT3G12390 191 / 4e-59 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1) AT5G13850 177 / 2e-53 NACA3 nascent polypeptide-associated complex subunit alpha-like protein 3 (.1) AT4G10480 170 / 7e-51 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1), Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.2) AT3G49470 163 / 5e-48 NACA2 nascent polypeptide-associated complex subunit alpha-like protein 2 (.1) AT1G33040 155 / 4e-45 NACA5 nascent polypeptide-associated complex subunit alpha-like protein 5 (.1) AT3G54900 99 / 2e-24 ATGRXCP, CXIP1 GLUTAREDOXIN, CAX interacting protein 1 (.1) AT4G04950 98 / 6e-22 AtGRXS17 Arabidopsis thaliana monothiol glutaredoxin 17, thioredoxin family protein (.1) AT2G38270 82 / 2e-17 ATGRX2, CXIP2 GLUTAREDOXIN, CAX-interacting protein 2 (.1) AT3G14460 61 / 1e-09 LRR and NB-ARC domains-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026133 [exp] 244 / 7e-81 AT3G12390 204 / 2e-68 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1) Lus10041610 [exp] 218 / 1e-69 AT3G12390 229 / 7e-77 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1) Lus10024109 [exp] 215 / 3e-69 AT3G12390 198 / 1e-65 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1) Lus10026132 [exp] 212 / 2e-60 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10032927 [exp] 160 / 1e-46 AT3G49470 260 / 2e-88 nascent polypeptide-associated complex subunit alpha-like protein 2 (.1) Lus10015579 [exp] 160 / 1e-46 AT3G49470 260 / 1e-88 nascent polypeptide-associated complex subunit alpha-like protein 2 (.1) Lus10026109 [exp] 144 / 5e-37 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10041501 [exp] 95 / 3e-22 AT3G54900 159 / 4e-49 GLUTAREDOXIN, CAX interacting protein 1 (.1) Lus10012592 [exp] 94 / 3e-22 AT3G54900 156 / 2e-48 GLUTAREDOXIN, CAX interacting protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G034400 [exp] 230 / 4e-74 AT3G12390 204 / 5e-67 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1) Potri.003G190800 [exp] 229 / 4e-74 AT3G12390 204 / 7e-67 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1) Potri.006G032000 [exp] 211 / 7e-67 AT3G12390 215 / 2e-71 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1) Potri.003G060600 [exp] 184 / 8e-57 AT3G15660 201 / 7e-67 A. THALIANA GLUTAREDOXIN 4, glutaredoxin 4 (.1.2) Potri.015G003300 [exp] 172 / 2e-51 AT3G49470 172 / 4e-54 nascent polypeptide-associated complex subunit alpha-like protein 2 (.1) Potri.012G006700 [exp] 157 / 1e-45 AT3G49470 171 / 1e-53 nascent polypeptide-associated complex subunit alpha-like protein 2 (.1) Potri.014G141200 [exp] 99 / 2e-24 AT3G54900 197 / 5e-65 GLUTAREDOXIN, CAX interacting protein 1 (.1) Potri.004G042200 [exp] 96 / 3e-21 AT4G04950 750 / 0.0 Arabidopsis thaliana monothiol glutaredoxin 17, thioredoxin family protein (.1) Potri.011G051400 [exp] 91 / 1e-19 AT4G04950 680 / 0.0 Arabidopsis thaliana monothiol glutaredoxin 17, thioredoxin family protein (.1) Potri.001G261600 [exp] 84 / 4e-17 AT3G14470 628 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01849 [flax] [poplar] NAC NAC domain CL0172 [flax] [poplar] Thioredoxin PF00462 [flax] [poplar] Glutaredoxin Glutaredoxin
Representative CDS sequence Show only first row Show all	>Lus10008687 pacid=23161957 polypeptide=Lus10008687 locus=Lus10008687.g ID=Lus10008687.BGIv1.0 annot-version=v1.0 ATGTTGAAGTTGGGAATGAAGCCCATGACCGGTGTCAGTCGAGTTACTGTCAAGAAGAGCAAGAATATCTTGTTCGTGATCTCGAAACCGGACGTGTTCA AGAGCCCAACATCGGACACATACATCATCTTCGGAGAGGCCAAGATCGAAGACATCAGCTCGCAGCTACAAAGCCAAGCAGCAGAGCAGTTCAAGGCCCC TGATCTAAGCCATATGATCTCGAAACCGGAGACATCTGGCATGGCTCAAGACGATGAGGAGGTGGATGAAACTGGAGTAGAACCAAAGGACGTTGAATTG GTTATGACACAGGCGGGAGTCTCTAGGCCTAAAGCCGTGAGGGCTCTCAAGGCTGCAGATGGGGACATTGTTCCTCGATGGGTTCATCAAGCAGAAATGA AATACTCCACTACAGTCCCCAGTGATCCTGACACTCATGAAGATTTCCGCCCTAGTAATAAGATCGAAAAGTCTGACGTAGCTTTGAAAGACATTGTTGA GCAGGATGTAAGGGACAACCCTGTGATGATATACATGAAAGGAGTCCCTGAGTTTCCTCAATGTGGATTTAGTGCATTGGCTGTGAGAGTACTGAAACTG TACAATGTTCCCATAAGTGCAAGAAACATTTTGGAGAATCCAGAGCTCAAAGGCGCAGTGAAAGGATTCAGCAACTGGCCAACATTTCCGCAGGTTTTCA TTAAAGGGGAGTTCATTGGCGGGTCGGATATAGTCCTCAATCTACACCAGATTGACTCTTCGTGGAAGTTCCTCTCTCACCATCTTCCCCACGGGCGCGT GTTTATTGAATCATTGAAGAAGCTAACCATCTGCAACCTTACAACACATTCCTTAGAAGAACTATGCCATCATGCTCCTCCTCACCTCACAAATCTATCA ATTGAAGGAAGTCCGGAGTTGGAGAGGCTCCCGGACATTGCATTGCCTAACCTCCATATCATCAAACAGCTCTGGATTCAGGACTGCGGTAATTTGAGGT CTCTTCCCAACCAGTTGCCAGAGCTCACCTCTCTTCTGCGTTTGGAGGTATCTGGCTGCTGGAGTTTAAAGTCTTTCCCAAAAGGTGGATTTCCTCCGAA TCTGATTGTGCTTATGATCACAGACTGCGAGAGTCTCATGATTGGGATTGCGAGCTGGGGTGTGCGTTTCCAGAACAGAGAACTGAAAGAACAGCTCCAA GAAGTCGGAGTGATATGA
AA sequence Show only first row Show all	>Lus10008687 pacid=23161957 polypeptide=Lus10008687 locus=Lus10008687.g ID=Lus10008687.BGIv1.0 annot-version=v1.0 MLKLGMKPMTGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIIFGEAKIEDISSQLQSQAAEQFKAPDLSHMISKPETSGMAQDDEEVDETGVEPKDVEL VMTQAGVSRPKAVRALKAADGDIVPRWVHQAEMKYSTTVPSDPDTHEDFRPSNKIEKSDVALKDIVEQDVRDNPVMIYMKGVPEFPQCGFSALAVRVLKL YNVPISARNILENPELKGAVKGFSNWPTFPQVFIKGEFIGGSDIVLNLHQIDSSWKFLSHHLPHGRVFIESLKKLTICNLTTHSLEELCHHAPPHLTNLS IEGSPELERLPDIALPNLHIIKQLWIQDCGNLRSLPNQLPELTSLLRLEVSGCWSLKSFPKGGFPPNLIVLMITDCESLMIGIASWGVRFQNRELKEQLQ EVGVI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15660		ATGRX4	A. THALIANA GLUTAREDOXIN 4, gl...		Lus10008687 [exp]	0	1
AT2G16860			GCIP-interacting family protei...		Lus10039220 [exp]	9.3	0.8555
AT1G03330			Small nuclear ribonucleoprotei...		Lus10029641 [exp]	9.4	0.8396
AT3G45020			Ribosomal L18p/L5e family prot...		Lus10016132 [exp]	12.5	0.8194
AT1G64750		DSS1(I), ATDSS1...	deletion of SUV3 suppressor 1(...		Lus10030906 [exp]	16.0	0.8245
AT4G30820			cyclin-dependent kinase-activa...		Lus10024924 [exp]	17.7	0.7969
AT5G59460			scarecrow-like transcription f...		Lus10001576 [exp]	23.3	0.8070
AT4G14965		ATMAPR4	membrane-associated progestero...		Lus10042022 [exp]	27.0	0.8029
AT1G71430			unknown protein		Lus10007091 [exp]	28.7	0.7805
AT1G02680		TAF13	TBP-associated factor 13 (.1)		Lus10018927 [exp]	31.2	0.8165
AT1G08845			Ribosomal L18p/L5e family prot...		Lus10001727 [exp]	34.2	0.7981

Compare expression of checked genes

Lus10008687 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.