Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07900 196 / 9e-59 Mitochondrial transcription termination factor family protein (.1) AT1G21150 165 / 3e-47 Mitochondrial transcription termination factor family protein (.1) AT5G64950 142 / 1e-38 Mitochondrial transcription termination factor family protein (.1) AT1G61970 113 / 9e-28 Mitochondrial transcription termination factor family protein (.1.2) AT1G61990 113 / 9e-28 Mitochondrial transcription termination factor family protein (.1) AT1G61980 110 / 7e-27 Mitochondrial transcription termination factor family protein (.1) AT1G79220 108 / 2e-26 Mitochondrial transcription termination factor family protein (.1) AT3G46950 107 / 2e-25 Mitochondrial transcription termination factor family protein (.1) AT1G62120 105 / 7e-25 Mitochondrial transcription termination factor family protein (.1) AT1G56380 101 / 1e-23 Mitochondrial transcription termination factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036450 [exp] 184 / 1e-54 AT5G07900 176 / 3e-51 Mitochondrial transcription termination factor family protein (.1) Lus10040820 [exp] 181 / 4e-53 AT5G07900 221 / 2e-68 Mitochondrial transcription termination factor family protein (.1) Lus10004329 [exp] 171 / 1e-49 AT5G64950 238 / 2e-75 Mitochondrial transcription termination factor family protein (.1) Lus10028912 [exp] 167 / 7e-48 AT5G64950 249 / 1e-79 Mitochondrial transcription termination factor family protein (.1) Lus10004957 [exp] 166 / 7e-48 AT5G07900 238 / 4e-75 Mitochondrial transcription termination factor family protein (.1) Lus10016550 [exp] 162 / 3e-46 AT5G07900 219 / 9e-68 Mitochondrial transcription termination factor family protein (.1) Lus10041122 [exp] 161 / 9e-46 AT5G07900 166 / 2e-47 Mitochondrial transcription termination factor family protein (.1) Lus10040817 [exp] 160 / 3e-45 AT5G07900 225 / 6e-70 Mitochondrial transcription termination factor family protein (.1) Lus10029199 [exp] 144 / 3e-39 AT5G64950 226 / 1e-70 Mitochondrial transcription termination factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G034700 [exp] 368 / 3e-126 AT5G07900 202 / 2e-61 Mitochondrial transcription termination factor family protein (.1) Potri.001G034933 [exp] 357 / 7e-122 AT5G07900 194 / 3e-58 Mitochondrial transcription termination factor family protein (.1) Potri.001G030300 [exp] 341 / 1e-115 AT5G07900 190 / 2e-56 Mitochondrial transcription termination factor family protein (.1) Potri.001G034966 [exp] 326 / 5e-110 AT5G07900 201 / 1e-60 Mitochondrial transcription termination factor family protein (.1) Potri.001G034900 [exp] 318 / 8e-107 AT5G07900 184 / 2e-54 Mitochondrial transcription termination factor family protein (.1) Potri.001G035000 [exp] 317 / 3e-106 AT5G07900 209 / 7e-64 Mitochondrial transcription termination factor family protein (.1) Potri.003G189300 [exp] 316 / 1e-105 AT5G07900 178 / 6e-52 Mitochondrial transcription termination factor family protein (.1) Potri.004G222000 [exp] 314 / 3e-105 AT5G07900 200 / 1e-60 Mitochondrial transcription termination factor family protein (.1) Potri.001G035200 [exp] 311 / 6e-104 AT5G07900 168 / 3e-48 Mitochondrial transcription termination factor family protein (.1) Potri.001G034600 [exp] 303 / 8e-101 AT5G07900 197 / 4e-59 Mitochondrial transcription termination factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [flax] [poplar] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Lus10008688 pacid=23161988 polypeptide=Lus10008688 locus=Lus10008688.g ID=Lus10008688.BGIv1.0 annot-version=v1.0 ATGGCGACTGTACTGTTCAGGGCCATTCTCTATGCAATTCCAAGGAGATTCCATTCAACCGCCGCCGGACCTCCTCCCTCCCCTTCATCTTCATTCACCG TCGATTACCTGGTGAAGTCATGCGGTCTCCCCTTGAAATCGGCTATCGCCGCCTCCGCCAAGCTCCAACTCGACGCCGACGACAACGAAAAGCCCGATTC CGTACTCCGATTCCTCAAGTCTCACGGCTTCACCGACGGCCACATCTCCACGCTGGTCCAGAAGCGCCCCTCGGTGCTCCATTGCAAGATCAATAGCAAC CTGGAGCCCAAATTCGAGTTCTTCAACAAAGTCGGATTCGTCGGTAAGAACCTTCCCGATCTCTTCGTCACAAACCCTTTACTTCTGAAGAGTTCTTTGG ATTTTTTCATCAAGCCGTCCGTTGAGTACCTGCTCTTGATTCTGGGTAGCTCTGAGCAAATCATGAACACGATTAAGCGTTCTTCATGGCTGCTCAGCTA CGATTTGAAAGGAAACATGCAGCCAAACATAGAGTTTCTGATAGGGGAAGGAGTTCCCAAAGTTAACATTGTGAATATGGTTGCTGCACATCCTAGATTG ATACTGATTAGGCATGACAGGATGGTTGAAGCTGTGAATTATGTGAAGAAGTTAGGGTTGGAACCGAAAACTCGGATGTTCATGCACGGCCTGAGATCTG CGGTTTCGATGAGTAAAGAGACTATCAAGAAGAAGATGGATGTGATGAAGAGTCTTGGATGGAGTGAGAGAGAGATTCTGTATGCTTTCAAGCGTTACCC GCTGTATTTGTCGTGTTCGGAGGAGAAGATGAGGAAGGCTATGGATTTTTATGTTAACACTGTGAAGTTGAAACCTGAGGTTATCATTAAGTATCCCAAG TTCATAATGCATTCGATTGAGAAGAGGATGCAGCCTAGGTTTACTGTTCTTCAGATTTTGACTTCCAAGAAGCTGGTGTCTGATAAGGCCAAGCCTTGCG GGCTGCTCATGATTTCCGAGGAGAAATTTGTCGAGAATTATGTGGCCAAGTTCGATGCTCAAGTTCCTGGACTTTTGGAGAGCTATACAGTTTCCAAGAA GGCGAAGAAGAAGAAGGGTCATTGA
AA sequence Show only first row Show all	>Lus10008688 pacid=23161988 polypeptide=Lus10008688 locus=Lus10008688.g ID=Lus10008688.BGIv1.0 annot-version=v1.0 MATVLFRAILYAIPRRFHSTAAGPPPSPSSSFTVDYLVKSCGLPLKSAIAASAKLQLDADDNEKPDSVLRFLKSHGFTDGHISTLVQKRPSVLHCKINSN LEPKFEFFNKVGFVGKNLPDLFVTNPLLLKSSLDFFIKPSVEYLLLILGSSEQIMNTIKRSSWLLSYDLKGNMQPNIEFLIGEGVPKVNIVNMVAAHPRL ILIRHDRMVEAVNYVKKLGLEPKTRMFMHGLRSAVSMSKETIKKKMDVMKSLGWSEREILYAFKRYPLYLSCSEEKMRKAMDFYVNTVKLKPEVIIKYPK FIMHSIEKRMQPRFTVLQILTSKKLVSDKAKPCGLLMISEEKFVENYVAKFDAQVPGLLESYTVSKKAKKKKGH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07900			Mitochondrial transcription te...		Lus10008688 [exp]	0	1
AT3G57990			unknown protein		Lus10021042 [exp]	1.7	0.7636
AT5G07900			Mitochondrial transcription te...		Lus10004957 [exp]	6.4	0.7863
AT4G10810			unknown protein		Lus10022380 [exp]	11.5	0.7054
AT5G57020		ATNMT1, NMT1	ARABIDOPSIS THALIANA MYRISTOYL...		Lus10021577 [exp]	12.2	0.7205
AT3G45210			Protein of unknown function, D...		Lus10000724 [exp]	14.5	0.7480
AT2G15820		OTP51	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10020996 [exp]	16.0	0.7703
AT1G32330	HSF	ATHSFA1D	heat shock transcription facto...		Lus10000312 [exp]	21.2	0.6910
AT4G35870			early-responsive to dehydratio...		Lus10028409 [exp]	25.9	0.7465
AT5G58530			Glutaredoxin family protein (....		Lus10007517 [exp]	26.5	0.7252
AT4G00650		FLA, FRI	FLOWERING LOCUS A, FRIGIDA-lik...		Lus10043012 [exp]	27.1	0.6775

Compare expression of checked genes

Lus10008688 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.