Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12400 479 / 5e-169 ELC, ATELC Ubiquitin-conjugating enzyme/RWD-like protein (.1) AT5G13860 461 / 3e-162 ELC-LIKE, ATELC-LIKE ELCH-like (.1) AT2G38830 107 / 4e-26 Ubiquitin-conjugating enzyme/RWD-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026129 [exp] 694 / 0 AT5G13860 485 / 2e-171 ELCH-like (.1) Lus10024108 [exp] 643 / 0 AT5G13860 502 / 6e-177 ELCH-like (.1) Lus10041612 [exp] 635 / 0 AT5G13860 499 / 1e-176 ELCH-like (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G034200 [exp] 553 / 0 AT5G13860 457 / 4e-161 ELCH-like (.1) Potri.003G191100 [exp] 519 / 0 AT3G12400 419 / 1e-145 Ubiquitin-conjugating enzyme/RWD-like protein (.1) Potri.002G046200 [exp] 180 / 6e-53 AT2G38830 280 / 9e-93 Ubiquitin-conjugating enzyme/RWD-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0596 [flax] [poplar] VPS23_C PF09454 [flax] [poplar] Vps23_core Vps23 core domain CL0208 [flax] [poplar] UBC PF05743 [flax] [poplar] UEV UEV domain
Representative CDS sequence Show only first row Show all	>Lus10008690 pacid=23161975 polypeptide=Lus10008690 locus=Lus10008690.g ID=Lus10008690.BGIv1.0 annot-version=v1.0 ATGTCGCCGCCACCCGCGGGCCCATCGTCGTCGCCGTCGCCGGTAATCCAACAGTTCCTCTCCTCGGTACTCTCGCAGCGCGGCCCATCAGCCCTCCCAT ACAGCGAAGACACCAAGTGGCTAATCCGACAGCAGCTCCTCGCTCTCGCCGGCTCTTACCCTTCTCTCGAGCCCAAAACGGCGACGTTCACCCACAACGA CGGCCGCTCCGCCAACCTGCTGCAGGCCGAAGGCACAATTCCGATGGTGTTCAAAGGAGTGACCTACAACATCCCGGTCATCATCTGGCTCATGGATTCT TACCCTCGGCACCCTCCCTGCGTCTTCGTCAATCCGACTCGCGACATGGTCATCAAGCGCCCCCACGCCCACGTCAATCCTTCTGGGTTAGTCTCCGTTC CGTATCTCCAGAATTGGATCTACCCTAGCTCTAATTTGCTCGATCTCGTTCGTGAATTGAGCGACGTCTTTGGACGTGATCCTCCTTTGTATTCCCAGCG ACACCCTAGCTCAAACCCTAATCCTAATCCCAATCCCAATCTTACGCATATTCCTACCCATGGTTTTGCCACTAATCCTTCCAATTTGTCGAATTCGTCA AACTTTGAATCCATATCAGGTCCTTACCAGCGGCCTTATCCTCCATCACCTTATGGCAGTGGAAATGCTAGTGCTACCCCTGCACGGCAGCACCAGACCG ATGATTCAGCAGAGATTTTCAGAAGGAACTCCATTAATAAGATAGTGGAAATGGCGCATGGGGATATCTCTCAGCTGAGGACAACGAGGGACGCAGAGAT GGAGGGGTTATTCAGTGCTCAGGCTGTTCTGAGGATGAGAGAGGAGGAGGTTCACTGGGGATTGAAGGAGTTGCAGGATGAGAAAGAAGGATTAGAGTCA GAATTACAAACCGTGCTGATGAATTCTGATTTTTTGGAAGGGTGGGTTAGGGAGAATGAAGGGAAGGTGAAGGGGAATCTCGGAGATGATGTGGATGGTG CTTTCGAAGGCATCGATTCTCTCTCGAAGCAGATGTTGGATTGCACCGCAGCAGATTTGGCAATTGAGGATGTAGTGTATTCATTGGACAAGGCAGTGCA GGAAGGAGCAATGCTCTTTGATCAGTACTTGAGGAATGTGAGGTTATTGTCAAGAGAGCAATTCTTTCATCGAGCGACCACTGCTAAAGTTAGGGCAATG CAGATGCAATCTCAGGTAGCTAATATGGCCGCTAGGATACAACAATTTTCCTCGTGA
AA sequence Show only first row Show all	>Lus10008690 pacid=23161975 polypeptide=Lus10008690 locus=Lus10008690.g ID=Lus10008690.BGIv1.0 annot-version=v1.0 MSPPPAGPSSSPSPVIQQFLSSVLSQRGPSALPYSEDTKWLIRQQLLALAGSYPSLEPKTATFTHNDGRSANLLQAEGTIPMVFKGVTYNIPVIIWLMDS YPRHPPCVFVNPTRDMVIKRPHAHVNPSGLVSVPYLQNWIYPSSNLLDLVRELSDVFGRDPPLYSQRHPSSNPNPNPNPNLTHIPTHGFATNPSNLSNSS NFESISGPYQRPYPPSPYGSGNASATPARQHQTDDSAEIFRRNSINKIVEMAHGDISQLRTTRDAEMEGLFSAQAVLRMREEEVHWGLKELQDEKEGLES ELQTVLMNSDFLEGWVRENEGKVKGNLGDDVDGAFEGIDSLSKQMLDCTAADLAIEDVVYSLDKAVQEGAMLFDQYLRNVRLLSREQFFHRATTAKVRAM QMQSQVANMAARIQQFSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12400		ELC, ATELC	Ubiquitin-conjugating enzyme/R...		Lus10008690 [exp]	0	1
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Lus10006071 [exp]	2.4	0.7808
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Lus10009435 [exp]	9.2	0.7219
AT2G17420		NTR2, ATNTRA, N...	NADPH-DEPENDENT THIOREDOXIN RE...		Lus10037596 [exp]	10.9	0.7804
AT5G16370		AAE5	acyl activating enzyme 5 (.1)		Lus10039161 [exp]	11.0	0.7464
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10002147 [exp]	14.1	0.7310
AT1G56150			SAUR-like auxin-responsive pro...		Lus10031178 [exp]	17.1	0.6888
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Lus10021304 [exp]	19.1	0.7256
AT4G35220			Cyclase family protein (.1)		Lus10014092 [exp]	20.7	0.7413
AT1G68070			Zinc finger, C3HC4 type (RING ...		Lus10034587 [exp]	24.2	0.7011
AT2G31820			Ankyrin repeat family protein ...		Lus10008329 [exp]	24.4	0.6628

Compare expression of checked genes

Lus10008690 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.