Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03210 306 / 4e-100 ATFUT2, FUT2 fucosyltransferase 2 (.1) AT2G03220 286 / 2e-92 ATFUT1, ATFT1, FT1, MUR2 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) AT1G14100 271 / 7e-87 FUT8 fucosyltransferase 8 (.1) AT1G14070 265 / 1e-84 FUT7 fucosyltransferase 7 (.1) AT2G15390 256 / 2e-81 ATFUT4, FUT4 fucosyltransferase 4 (.1.2) AT2G15350 248 / 5e-79 ATFUT10, FUT10 fucosyltransferase 10 (.1) AT2G15370 241 / 3e-75 ATFUT5, FUT5 ARABIDOPSIS FUCOSYLTRANSFERASE 5, fucosyltransferase 5 (.1) AT1G14080 239 / 2e-74 ATFUT6, FUT6 fucosyltransferase 6 (.1) AT1G14110 233 / 7e-73 ATFUT9, FUT9 fucosyltransferase 9 (.1) AT1G74420 191 / 4e-56 ATFUT3, FUT3 fucosyltransferase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026125 [exp] 715 / 0 AT2G03210 305 / 6e-100 fucosyltransferase 2 (.1) Lus10041644 [exp] 399 / 4e-137 AT2G03220 379 / 7e-126 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10012571 [exp] 396 / 4e-135 AT2G03220 349 / 7e-114 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10024076 [exp] 395 / 5e-135 AT2G03220 374 / 5e-124 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10041645 [exp] 392 / 1e-134 AT2G03220 315 / 2e-101 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10041642 [exp] 337 / 2e-112 AT2G03220 454 / 8e-155 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10026128 [exp] 324 / 1e-107 AT2G03220 395 / 4e-132 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10013549 [exp] 302 / 7e-99 AT2G03220 357 / 4e-117 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10008696 [exp] 301 / 6e-98 AT2G03220 504 / 3e-174 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G191200 [exp] 332 / 2e-110 AT2G03220 570 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.001G034100 [exp] 324 / 3e-107 AT2G03220 560 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191500 [exp] 325 / 4e-107 AT2G03220 570 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.008G090000 [exp] 317 / 3e-104 AT2G03220 744 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.001G033800 [exp] 313 / 2e-101 AT2G03220 524 / 3e-180 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191401 [exp] 307 / 5e-99 AT2G03220 555 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191301 [exp] 278 / 2e-88 AT2G03220 524 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03254 [flax] [poplar] XG_FTase Xyloglucan fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10008693 pacid=23161953 polypeptide=Lus10008693 locus=Lus10008693.g ID=Lus10008693.BGIv1.0 annot-version=v1.0 ATGGTGGATCTATTCTGCGAGCCGTTTCTGAACTCGACCTGGTATTTACCTGAAACTTTTCCTTTCAGATTTAAATTCTACACATATGGATTCAGAGAGA ATTACAGCTACGGGAATATACTGCGGAAGAATGATAATAAGCCGCCGGCGGATTCGTCGCCAGCGCCGTCCATGGTCCAGATCTTCCTCCACGATAAGTA CAACGATTACGACAAGCTCTTCTTCAAAGACGAGAATCAAGCGTTTCTACAGAGAGTCCCCTGGCTGATTGTAATGGGAGATGGATATTCCATCCCTTGC CTGTTTCAGATGAAGTCGTTTCAATCCGAATTGACCAAATTGTTCCCGGACGAAGGGAAAGTGTTTCACCATTTGGGGAGATACTTGTTCAGCCCTTCCA ATCAAGCTTGGGAACTCATCACCAGGTTCTATGATTCATACCTGGCGAAATCGGAGGAGAAAATAGGGATTCAAATTAGGGTTTTCAAGCCGAAGCAAGT CTCGCATTCAGTCGTAATGAATCAGATCCTAAACTGTACACAGAAGCAGAAAATCCTTCCCATTTCTGCACCTTCCTCCAACCAAACAACAACGAAATCC GTCCTGATTGCATCATTGTCGAAGAAATTCTACGAGGAGATCAATTCGATCTACGGTCGAACCGGAAGTGGGATCGGAGTGTATCAGGCGAGTCACGAAG AGAAGCAGCATTCCGGTGATCTCACCCACAACATGAAAGCCTGGGTGGATATTTATCTGTTGAGTATGAGCAATAAGTTGGTGACTAGCAGAATGTCGAC GTTCGGATATGTGGCGGCGGGTCTCGGCGCGTTGAGGCCGTGGATTGTGATGACCCCTGATCCTGATCACGGCGGTGGGACTCCCGTGCCGTCTTGCGAG AGAGGTTGGAATACAGAGCCGTGCTTCCATTTCCCGCCGTGGTTTGCTTATCCTGATCAGCCTGGGAATGATGCGAAGAATGTCGGACGGTGTGAAGACG TGCCGTGGGGACTGAAGCTCGTCGATGGGTACAGTGGGAAGAAAGGTTAG
AA sequence Show only first row Show all	>Lus10008693 pacid=23161953 polypeptide=Lus10008693 locus=Lus10008693.g ID=Lus10008693.BGIv1.0 annot-version=v1.0 MVDLFCEPFLNSTWYLPETFPFRFKFYTYGFRENYSYGNILRKNDNKPPADSSPAPSMVQIFLHDKYNDYDKLFFKDENQAFLQRVPWLIVMGDGYSIPC LFQMKSFQSELTKLFPDEGKVFHHLGRYLFSPSNQAWELITRFYDSYLAKSEEKIGIQIRVFKPKQVSHSVVMNQILNCTQKQKILPISAPSSNQTTTKS VLIASLSKKFYEEINSIYGRTGSGIGVYQASHEEKQHSGDLTHNMKAWVDIYLLSMSNKLVTSRMSTFGYVAAGLGALRPWIVMTPDPDHGGGTPVPSCE RGWNTEPCFHFPPWFAYPDQPGNDAKNVGRCEDVPWGLKLVDGYSGKKG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03210		ATFUT2, FUT2	fucosyltransferase 2 (.1)		Lus10008693 [exp]	0	1
AT1G26270			Phosphatidylinositol 3- and 4-...		Lus10000012 [exp]	12.8	0.8351
AT1G10140			Uncharacterised conserved prot...		Lus10007729 [exp]	13.5	0.8566
AT4G14130		XTR7, XTH15	xyloglucan endotransglycosylas...		Lus10028947 [exp]	13.6	0.8542
AT1G25420			Regulator of Vps4 activity in ...		Lus10041442 [exp]	18.9	0.8563
AT1G73500		ATMKK9	MAP kinase kinase 9 (.1)		Lus10001081 [exp]	22.2	0.8113
AT1G26270			Phosphatidylinositol 3- and 4-...		Lus10000011 [exp]	23.2	0.8276
AT1G70985			hydroxyproline-rich glycoprote...		Lus10034112 [exp]	24.3	0.8175
AT4G24370			unknown protein		Lus10010164 [exp]	35.0	0.7664
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036929 [exp]	38.7	0.8286
AT3G60800			DHHC-type zinc finger family p...		Lus10024561 [exp]	46.5	0.8062

Compare expression of checked genes

Lus10008693 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.