Plant FIBer expression Database

Lus10008694 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10008694 pacid=23161924 polypeptide=Lus10008694 locus=Lus10008694.g ID=Lus10008694.BGIv1.0 annot-version=v1.0
ATGCCTGCAGATGGGTTGAACGACGAGAATCTAAGTGATCAGAAAGCGAAGATAGATTCGTTGGAGGAAGAATTGAAAAAGAAAGAGATGGAGATTGAAG
AGATGAAGAAGACGATAGCCGACAAGAACGATATGGTTACACTTGATGACATAGTTGCTACCTTGCTCAAGGAAAAAGTAGAGATGACCAAACAACTACA
GGGCAAAGACCAAGAGCTGCAACAAAAGGCAGAGGAATTGAAGGCTAAAGATGACGAGATTGCTAAACAAGAAGCGGAATTGGAGAAGATGAAGAAAACT
ACGGCTCAGGTTGAAGAGGAGATGAAAACGAATTTGGTGGAGGAGATTGGTAAGTTGAAGGAGGAAATCAAGGAAAAGACGGAGAAATTGAAGGTTAAGG
ATGACGAAATTGCGGAATTGGAGAAGATGATGAAAACTGCGGCTCAAGCGGAAGAGGAGATGAAAACGAATTTGGTGGAGGAGATTGGTAAGTTGAAGGA
GGAAATCAAAGAAAAGACAGAGAAATTGAAGGTTAAAGATGACGAAATTGCGGAATTGGAGAAGATGATGAAAACTAGGGCTCAAGCGGAAGAGGAGATG
AAAACGAATTTGGAGGAGGAGATTGGTAAGTTGAAGGAAGAAATAAAAGACAAAGACGAGCAGATTACAAGGATGGAGGAACAGAAAATGGAGGAAGTTA
AGATGATGAATGAGGAGATGGATAAGAAAGATGCCGAATTCGAGGCGAAGAAGAAGGAGATGATTGAAGCCGAAGAGGCGACGAAGAAGAAATTGGAGGA
AGAGGTTGGCAAGTTGAAGGAGGCAATCAAGGCGGATAAGAAATTAATAAACCAGAAGGAGAGGGCTATCAAGACAAAGGACAAGCAGATTAAGAAACAG
ATCGATAAGCTGGCGATAAGGATGAAGAAGTTGGAAGCAGCACAAGGTAGGATACTTGATTTGAAGAAAGCTCTTAGAGTATTTACTGCGGTGGACGACG
ATGATGACGACGACGATGAGGAAGATGACGAGGATGACGAGGATGAAGACGAATGA
AA sequence
>Lus10008694 pacid=23161924 polypeptide=Lus10008694 locus=Lus10008694.g ID=Lus10008694.BGIv1.0 annot-version=v1.0
MPADGLNDENLSDQKAKIDSLEEELKKKEMEIEEMKKTIADKNDMVTLDDIVATLLKEKVEMTKQLQGKDQELQQKAEELKAKDDEIAKQEAELEKMKKT
TAQVEEEMKTNLVEEIGKLKEEIKEKTEKLKVKDDEIAELEKMMKTAAQAEEEMKTNLVEEIGKLKEEIKEKTEKLKVKDDEIAELEKMMKTRAQAEEEM
KTNLEEEIGKLKEEIKDKDEQITRMEEQKMEEVKMMNEEMDKKDAEFEAKKKEMIEAEEATKKKLEEEVGKLKEAIKADKKLINQKERAIKTKDKQIKKQ
IDKLAIRMKKLEAAQGRILDLKKALRVFTAVDDDDDDDDEEDDEDDEDEDE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10008694
[exp]
0 1
Lus10008695
[exp]
1.0 0.9670
AT5G66390 Peroxidase superfamily protein... Lus10041784
[exp]
1.4 0.9363
AT3G55310 NAD(P)-binding Rossmann-fold s... Lus10006695
[exp]
5.5 0.8273
Lus10038309
[exp]
11.8 0.8491
AT1G17615 Disease resistance protein (TI... Lus10005374
[exp]
15.6 0.7333
AT2G46860 ATPPA3 pyrophosphorylase 3 (.1) Lus10028320
[exp]
18.0 0.7852
AT1G52790 2-oxoglutarate (2OG) and Fe(II... Lus10005773
[exp]
20.4 0.8135
AT1G44970 Peroxidase superfamily protein... Lus10033193
[exp]
20.9 0.7686
AT1G14040 EXS (ERD1/XPR1/SYG1) family pr... Lus10030440
[exp]
24.2 0.7555
Lus10015758
[exp]
29.5 0.8509

Lus10008694 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.