Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042237 [exp] 46 / 5e-05 AT4G27595 44 / 5e-04 Plant protein of unknown function (DUF827) (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008695 pacid=23161968 polypeptide=Lus10008695 locus=Lus10008695.g ID=Lus10008695.BGIv1.0 annot-version=v1.0 ATGAAGATATACCCTCTATATGGAAACAAAAGCCTTTTCCTGTGTGCCGGCGGTGATCTTAACACCATCGAAGTCCGCAATTCCGGTGGCCAGCACGATA CTCGAAACAGTATGTACCCTTACACAGACTGGGGGGTGGTCGAAAAGATCCACCCTGATGGTGTGGGGACCCAGTACACTGCGGTGGATGTCAACGGCCT GGTCATCCAAGGACCCATTTTGGTGAAGCTGTACATATCCCTGGAGAAAGGTAACCGGCTGGCAAACTTCGCTGGTGTCCAGATCGTTTGTGAACGCAAC CAATCTGGACAGCTACAGGGCAAAAAGAACGCCAGCTCATTCGGATGGCAGTGGTTCAAAGACGACGGTAGCTCTACAGGTTCTTCCACGAGCCTCGAAA AGCAGGTCGATGATCTAACAGAGCAGCTGAAGAAGGAGCAGGTGGAGAAGGATGGGATCATAAAGAAAAAAGATGAGGACCTCAAAGAGAAAGACCGTAA GTTGAAGGAGCTAAACGCAGTTGTCAAGGAAGAGGCGGACAAGAGAAAACGGGAGCTGGATGCGAAGAACAAAAAGATAACGGAGTTGGACGGAATTGTC AAGAAGAAAGACGATGAGATTGCAACAATCACAAGTCAGCATTCGTCGTTAGAAAGTGAAATCAAGAGGCTTAATGAAACGATCAGGAAAGGAGAAGTAG CCGCCGAGACGAATCAGGACGAATTTATCAAGGAGTTTGAGAAAAAAGTAGCGGAAAGAAACGAGGAGCTGAATTCAAAAAACGAAAAAATCAAGGAGCT AGAATCATTTATTGACGAGATGGATGGTAAGAGAAAGCAAGACTTGGATGCAAAGAACGACAAAATAAAGGAGCTAGAAGCAATTATTGAAGAGATGGAT GGCAAGAAAAAGCAGGACTTGGATGCAATGAACGACAAAATAAAGGAGCTAGAAGCAATAATTCGGCAGAAAGATGATGAGATTGCAACAATGAAAGTTC AGATCACGGCTCCCGGAGGAATTAAAGTGGAGGAAATCGTCACAGATTCTAAGAAGGGCAAAATAACCATTTCCTTCACAATTGGTGAGTACTCCATTTA TTATTCACACGTTCATGATTTTTACAAATACATGAAACCCACTAATTAA
AA sequence Show only first row Show all	>Lus10008695 pacid=23161968 polypeptide=Lus10008695 locus=Lus10008695.g ID=Lus10008695.BGIv1.0 annot-version=v1.0 MKIYPLYGNKSLFLCAGGDLNTIEVRNSGGQHDTRNSMYPYTDWGVVEKIHPDGVGTQYTAVDVNGLVIQGPILVKLYISLEKGNRLANFAGVQIVCERN QSGQLQGKKNASSFGWQWFKDDGSSTGSSTSLEKQVDDLTEQLKKEQVEKDGIIKKKDEDLKEKDRKLKELNAVVKEEADKRKRELDAKNKKITELDGIV KKKDDEIATITSQHSSLESEIKRLNETIRKGEVAAETNQDEFIKEFEKKVAERNEELNSKNEKIKELESFIDEMDGKRKQDLDAKNDKIKELEAIIEEMD GKKKQDLDAMNDKIKELEAIIRQKDDEIATMKVQITAPGGIKVEEIVTDSKKGKITISFTIGEYSIYYSHVHDFYKYMKPTN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10008695 [exp]	0	1
					Lus10008694 [exp]	1.0	0.9670
AT5G66390			Peroxidase superfamily protein...		Lus10041784 [exp]	2.0	0.8757
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10030440 [exp]	13.3	0.7574
AT1G72490			unknown protein		Lus10013160 [exp]	16.2	0.7801
AT5G07050			nodulin MtN21 /EamA-like trans...		Lus10008706 [exp]	19.4	0.7793
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Lus10029406 [exp]	21.1	0.8664
					Lus10038309 [exp]	23.1	0.8291
AT5G61830			NAD(P)-binding Rossmann-fold s...		Lus10001968 [exp]	23.2	0.8612
AT1G17615			Disease resistance protein (TI...		Lus10005374 [exp]	23.7	0.7083
AT1G05030			Major facilitator superfamily ...		Lus10030010 [exp]	27.0	0.8408

Compare expression of checked genes

Lus10008695 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.