Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03220 503 / 6e-174 ATFUT1, ATFT1, FT1, MUR2 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) AT2G03210 489 / 1e-168 ATFUT2, FUT2 fucosyltransferase 2 (.1) AT1G14070 459 / 2e-157 FUT7 fucosyltransferase 7 (.1) AT1G14080 441 / 5e-150 ATFUT6, FUT6 fucosyltransferase 6 (.1) AT1G14100 439 / 2e-149 FUT8 fucosyltransferase 8 (.1) AT2G15390 427 / 3e-144 ATFUT4, FUT4 fucosyltransferase 4 (.1.2) AT2G15370 412 / 2e-138 ATFUT5, FUT5 ARABIDOPSIS FUCOSYLTRANSFERASE 5, fucosyltransferase 5 (.1) AT1G14110 407 / 2e-137 ATFUT9, FUT9 fucosyltransferase 9 (.1) AT2G15350 405 / 4e-137 ATFUT10, FUT10 fucosyltransferase 10 (.1) AT1G74420 372 / 3e-123 ATFUT3, FUT3 fucosyltransferase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036776 [exp] 509 / 1e-175 AT2G03220 659 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10037152 [exp] 441 / 2e-151 AT2G03220 564 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10029049 [exp] 441 / 4e-149 AT2G03220 450 / 5e-153 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10041642 [exp] 434 / 4e-147 AT2G03220 454 / 8e-155 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10041641 [exp] 429 / 1e-144 AT1G14100 426 / 5e-144 fucosyltransferase 8 (.1) Lus10026128 [exp] 410 / 8e-138 AT2G03220 395 / 4e-132 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10013549 [exp] 375 / 6e-124 AT2G03220 357 / 4e-117 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10024076 [exp] 372 / 7e-123 AT2G03220 374 / 5e-124 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10012571 [exp] 372 / 1e-122 AT2G03220 349 / 7e-114 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G191401 [exp] 587 / 0 AT2G03220 555 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.001G033800 [exp] 541 / 0 AT2G03220 524 / 3e-180 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191200 [exp] 541 / 0 AT2G03220 570 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191500 [exp] 539 / 0 AT2G03220 570 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.001G034100 [exp] 536 / 0 AT2G03220 560 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191301 [exp] 530 / 0 AT2G03220 524 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.008G090000 [exp] 526 / 0 AT2G03220 744 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03254 [flax] [poplar] XG_FTase Xyloglucan fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10008696 pacid=23161926 polypeptide=Lus10008696 locus=Lus10008696.g ID=Lus10008696.BGIv1.0 annot-version=v1.0 ATGGAAGAGTTGCAGTCGAGGAGATTTACCACAGTTTGGATTGTGTGTTTCGTAGTCCTCCCAGCATCCATCATATTAGTAATGATGTCTCACAGTTCAA TCTTCAATGGCAATGCAGCAGGATTCAGTATAAGGAACATCCTCAGAGGAGGAAGAGGACATATTCCAACAGCACAAGGTCCAAGAATTGCTCCTTCCCA ACAACCAGCTGCACCAAACCCTTCTCCCAAGTTCAAACCAACATCAGACACTAAAGACAGTAAGTTTCTGAATGGACTTTTACCACCCGGACACGATGAA CCATCGTGCCTGAGCAGGCACCAAACTTACCGCAAACATTCACCTCACAACCCATCTCCATATCTGATATCCAAGTTAAGAAAATACGAAGACCTCCACA GCCGATGTGGACCGAGAACTGCACCTTACAAGAGAGCATTGAGAAATCTCAAGTCCAACCGAGTTTTTGATGATCCTGACAGAAGTTACTGCAAGTATGT TGTATGGCTACCGGCAAACGGATTGGGGAACAGAATGATAAGTATGGCTTCCACGTTCCTCTTTGCAATCCTGACAGACAGAGTTCTCCTCGTTCATCAA AGACCTGACATGGAAGATCTCTTCTGCGAGCCCTTTCCGAATTCTTCGTGGATCCTGTCGAAGGATTTCCCCTTGCAGAAACACTTTTGGGATGAAAAGC ATAGGCATGAACACAGCATTGGAAGCATGGTGAATAAGCAGCATCGTCACGGGAGTGATGTTCCGTATCTGTTTGTTAGTGTGAATCATGGTCGATACGA TGGTGACAATGTGTTCTACTGTGAGAGAGGCCAATCTTCGATCAAGAACGTTACTTGGTTGGTTATGCTGTCGGATCAGTACTATGCGCCATCTTTCTTC ACCATGGAGCCCTTCAGGGAAGAGGCAGAGAAGATGTTTCCTGACAAAGAAACTGTCTTTCATCACCTCGGCAGGTATCTGTTCCATCCATCCAATCAGG CTTGGGGGTTGATCAGAAGGTTCTATTTGGCCTACCTTGCCAAGGCGGATCAGAGGATTGGCCTCCAGATCAGAGTCTTCGATCCGAAATCCATTGCTTT CGATACTGTTATGAATCAGATATTGGAATGCTCTTCAAATGAAAGGATATTACCAGAGCTCGATGAAGTAAATAACGTTGCTTCTCTGTCAAGTAACGTG ACATCAACCTCCACCAAGGCCATCCTTGTGGTTTCGTTGTCCTCCGAGTACTACGAGCACATCAAGAACATGTACTGGACTAAGCCGACCACAACAGGTG ATGTTGTCGCAGTGTACCAGGCGAGCCACGAGGAGTTTCAGAAGTTCGGAGACAATATGCACAACATGAAGGCGTGGGCGGAGATCAGTCTTCTTAGTAC CGTTGATGTTATGGTGACGAGTGCTTGGTCGACCTTTGGATATGTGGCTCAAGGGCTAGGAGGGCTAAAGCCGTGGATTCTGTACAAGGTGAGTGACAAG AAGGTTCCGGACCCGGCTTGTGTGAGGGACCTGTCGATGGATCCTTGCTTCCATTTCCCTCCTAGTTATGACTCCAAGACTAATGAGAAGGTTGATGCTG GTGCTCTTGTGCCTTACTTGAGACACTGTAAGGACTTGAACTGGGGAGTTAAACTGGTGGGGAGTGGGCAAAAATCATTGTAA
AA sequence Show only first row Show all	>Lus10008696 pacid=23161926 polypeptide=Lus10008696 locus=Lus10008696.g ID=Lus10008696.BGIv1.0 annot-version=v1.0 MEELQSRRFTTVWIVCFVVLPASIILVMMSHSSIFNGNAAGFSIRNILRGGRGHIPTAQGPRIAPSQQPAAPNPSPKFKPTSDTKDSKFLNGLLPPGHDE PSCLSRHQTYRKHSPHNPSPYLISKLRKYEDLHSRCGPRTAPYKRALRNLKSNRVFDDPDRSYCKYVVWLPANGLGNRMISMASTFLFAILTDRVLLVHQ RPDMEDLFCEPFPNSSWILSKDFPLQKHFWDEKHRHEHSIGSMVNKQHRHGSDVPYLFVSVNHGRYDGDNVFYCERGQSSIKNVTWLVMLSDQYYAPSFF TMEPFREEAEKMFPDKETVFHHLGRYLFHPSNQAWGLIRRFYLAYLAKADQRIGLQIRVFDPKSIAFDTVMNQILECSSNERILPELDEVNNVASLSSNV TSTSTKAILVVSLSSEYYEHIKNMYWTKPTTTGDVVAVYQASHEEFQKFGDNMHNMKAWAEISLLSTVDVMVTSAWSTFGYVAQGLGGLKPWILYKVSDK KVPDPACVRDLSMDPCFHFPPSYDSKTNEKVDAGALVPYLRHCKDLNWGVKLVGSGQKSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10008696 [exp]	0	1
AT2G43040		NPG1	no pollen germination 1, tetra...		Lus10033595 [exp]	1.7	0.7903
AT3G01270			Pectate lyase family protein (...		Lus10036721 [exp]	5.2	0.7659
AT5G57150	bHLH	bHLH035	basic helix-loop-helix (bHLH) ...		Lus10036068 [exp]	8.3	0.8002
AT1G01140		PKS6, CIPK9, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Lus10030210 [exp]	12.7	0.7917
AT4G19180			GDA1/CD39 nucleoside phosphata...		Lus10039953 [exp]	18.3	0.7544
AT4G28740			unknown protein		Lus10022845 [exp]	20.1	0.7894
AT5G16010			3-oxo-5-alpha-steroid 4-dehydr...		Lus10028869 [exp]	20.2	0.7859
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10030430 [exp]	20.3	0.7070
AT1G27180			disease resistance protein (TI...		Lus10008519 [exp]	27.0	0.7492
AT3G09870			SAUR-like auxin-responsive pro...		Lus10026531 [exp]	32.2	0.7481

Compare expression of checked genes

Lus10008696 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.