Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12480 194 / 1e-60 CCAAT NF-YC11 "nuclear factor Y, subunit C11", nuclear factor Y, subunit C11 (.1) AT5G19490 134 / 8e-38 CCAAT Histone superfamily protein (.1) AT1G54830 52 / 1e-07 CCAAT NF-YC3 "nuclear factor Y, subunit C3", nuclear factor Y, subunit C3 (.1.2.3) AT5G63470 51 / 2e-07 CCAAT NF-YC4 "nuclear factor Y, subunit C4", nuclear factor Y, subunit C4 (.1.2) AT1G08970 51 / 2e-07 CCAAT NF-YC9, HAP5C "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) AT1G56170 50 / 3e-07 CCAAT NF-YC2, ATHAP5B, HAP5B "nuclear factor Y, subunit C2", nuclear factor Y, subunit C2 (.1.2) AT3G48590 50 / 3e-07 CCAAT NF-YC1, ATHAP5A, HAP5A "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) AT5G50490 45 / 9e-06 CCAAT NF-YC5 "nuclear factor Y, subunit C5", nuclear factor Y, subunit C5 (.1) AT5G50480 43 / 8e-05 CCAAT NF-YC6 "nuclear factor Y, subunit C6", nuclear factor Y, subunit C6 (.1) AT5G27910 42 / 0.0001 CCAAT NF-YC8 "nuclear factor Y, subunit C8", nuclear factor Y, subunit C8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026118 [exp] 386 / 2e-136 AT3G12480 181 / 9e-56 "nuclear factor Y, subunit C11", nuclear factor Y, subunit C11 (.1) Lus10041638 [exp] 306 / 6e-105 AT3G12480 204 / 9e-65 "nuclear factor Y, subunit C11", nuclear factor Y, subunit C11 (.1) Lus10024082 [exp] 169 / 1e-51 AT3G12480 81 / 5e-18 "nuclear factor Y, subunit C11", nuclear factor Y, subunit C11 (.1) Lus10026780 [exp] 152 / 2e-44 AT5G19490 189 / 1e-58 Histone superfamily protein (.1) Lus10008013 [exp] 50 / 1e-07 AT1G54830 112 / 5e-32 "nuclear factor Y, subunit C3", nuclear factor Y, subunit C3 (.1.2.3) Lus10024515 [exp] 50 / 2e-07 AT1G56170 119 / 6e-35 "nuclear factor Y, subunit C2", nuclear factor Y, subunit C2 (.1.2) Lus10016750 [exp] 51 / 3e-07 AT3G48590 298 / 1e-102 "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) Lus10041221 [exp] 50 / 3e-07 AT1G08970 248 / 2e-83 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Lus10021934 [exp] 50 / 4e-07 AT1G08970 250 / 5e-84 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G033200 [exp] 274 / 6e-92 AT3G12480 221 / 7e-71 "nuclear factor Y, subunit C11", nuclear factor Y, subunit C11 (.1) Potri.003G192100 [exp] 268 / 2e-89 AT3G12480 224 / 4e-72 "nuclear factor Y, subunit C11", nuclear factor Y, subunit C11 (.1) Potri.001G225400 [exp] 145 / 1e-41 AT3G12480 180 / 1e-54 "nuclear factor Y, subunit C11", nuclear factor Y, subunit C11 (.1) Potri.009G022050 [exp] 131 / 3e-36 AT3G12480 118 / 3e-31 "nuclear factor Y, subunit C11", nuclear factor Y, subunit C11 (.1) Potri.015G097400 [exp] 51 / 2e-07 AT3G48590 314 / 3e-109 "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) Potri.005G094900 [exp] 51 / 2e-07 AT1G56170 242 / 5e-81 "nuclear factor Y, subunit C2", nuclear factor Y, subunit C2 (.1.2) Potri.007G070900 [exp] 51 / 2e-07 AT1G56170 235 / 3e-78 "nuclear factor Y, subunit C2", nuclear factor Y, subunit C2 (.1.2) Potri.001G106900 [exp] 49 / 2e-07 AT1G54830 112 / 6e-32 "nuclear factor Y, subunit C3", nuclear factor Y, subunit C3 (.1.2.3) Potri.005G035800 [exp] 50 / 3e-07 AT1G08970 246 / 5e-82 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Potri.010G032301 [exp] 50 / 3e-07 AT1G08970 237 / 1e-78 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF00808 [flax] [poplar] CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Representative CDS sequence Show only first row Show all	>Lus10008701 pacid=23161979 polypeptide=Lus10008701 locus=Lus10008701.g ID=Lus10008701.BGIv1.0 annot-version=v1.0 ATGCAAGCTGATGAAGATGTTGGGAAGATAGCTTTAGCAGTACCTGTTTTAGTTTCTAAAGCATTGGAATTGTTTTTGCAAGATCTTTGTGACCGTACAT ATGAAGTTACCCTCCAAAGAGGAGCAAAGACCATGAATTCACTGCATCTAAAACATTGTGTACAGCGCTATAATGTATTTGATTTTCTGCGAGAAATCGT CAGTAAGGTACCGGATTACGGCAATGGTCAGGGGCACTCTGATGGATCCTCGGACCATAAAACCATTCACAAGAGAAAGCCGACTCTAGATGAAGGCAAT GAGAGTGACGAAGAATCAAAGAAAAGCAGGATGATGCATGACCCGAGCCATCCAGTTGGTACTGGTCGTGGTCGAGGTCGTGGCCGAGGAAGGGGAAGAG GAAGAAGCGTTCGAAACACAGAAAGAGAGTATCCTCATCACGAGGTCGAATCTGAATCTTGCACAACTCCACAGGGCACGAGAACCAGCTCAATTCCTGC GTTTCCGATAGACGAAAAGGCAGAATCGAAGGAAGTGATTAAAGAGCCAATGCAAGTAACCGATGGCGCTACTGAACCCGAAACAAAAATCGATCTAAAC GCCGAAGTCAAAGAGAATGAAGTTACAAAACCTGCAGCAGCACCTTTCTCTGCATCAGCTCCAGCACCAGGCCAAGGCGATACAGCCATGGCGATCCATG AAGAATACCCAGGCTGGTCACTTTCAGAGGTCGATAAGATGGCCATCGATCCTGTTCAGCTTGCAAGATTAACCACAAGGATTGACGAGGAGGCGGAAGA CTATGACGAAGAAGAATGA
AA sequence Show only first row Show all	>Lus10008701 pacid=23161979 polypeptide=Lus10008701 locus=Lus10008701.g ID=Lus10008701.BGIv1.0 annot-version=v1.0 MQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEVTLQRGAKTMNSLHLKHCVQRYNVFDFLREIVSKVPDYGNGQGHSDGSSDHKTIHKRKPTLDEGN ESDEESKKSRMMHDPSHPVGTGRGRGRGRGRGRGRSVRNTEREYPHHEVESESCTTPQGTRTSSIPAFPIDEKAESKEVIKEPMQVTDGATEPETKIDLN AEVKENEVTKPAAAPFSASAPAPGQGDTAMAIHEEYPGWSLSEVDKMAIDPVQLARLTTRIDEEAEDYDEEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12480	CCAAT	NF-YC11	"nuclear factor Y, subunit C11...		Lus10008701 [exp]	0	1
AT3G58110			unknown protein		Lus10002186 [exp]	9.3	0.6925
AT5G17900			microfibrillar-associated prot...		Lus10005672 [exp]	12.0	0.7161
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Lus10023155 [exp]	19.0	0.6463
AT3G49601			unknown protein		Lus10008501 [exp]	22.8	0.6777
AT1G09700		DRB1, HYL1	HYPONASTIC LEAVES 1, DSRNA-BIN...		Lus10008862 [exp]	32.0	0.6104
AT1G62830		ATLSD1, ATSWP1,...	ARABIDOPSIS LYSINE-SPECIFIC HI...		Lus10015996 [exp]	33.0	0.6269
AT2G28105			unknown protein		Lus10021424 [exp]	41.9	0.6438
AT3G61650		TUBG1	gamma-tubulin (.1)		Lus10010985 [exp]	49.6	0.6318
AT5G47570			unknown protein		Lus10008504 [exp]	56.2	0.6349
AT4G16060			unknown protein		Lus10016832 [exp]	61.1	0.5938

Compare expression of checked genes

Lus10008701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.