Lus10008702 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G12490 242 / 2e-81 ATCYS6, ATCYSB ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2)
AT5G05110 175 / 1e-54 Cystatin/monellin family protein (.1)
AT2G40880 122 / 2e-35 ATCYSA, FL3-27 cystatin A (.1)
AT5G12140 102 / 9e-28 ATCYS1 cystatin-1 (.1)
AT5G47550 63 / 2e-12 Cystatin/monellin superfamily protein (.1)
AT4G16500 57 / 1e-10 Cystatin/monellin superfamily protein (.1)
AT2G31980 51 / 4e-08 AtCYS2 PHYTOCYSTATIN 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026117 377 / 9e-134 AT3G12490 261 / 2e-88 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2)
Lus10026779 114 / 3e-32 AT3G12490 129 / 2e-39 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2)
Lus10041257 52 / 2e-08 AT2G31980 72 / 9e-17 PHYTOCYSTATIN 2 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G032900 272 / 3e-93 AT3G12490 276 / 2e-95 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2)
Potri.003G192200 268 / 6e-91 AT3G12490 303 / 6e-105 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2)
Potri.016G030900 222 / 6e-73 AT3G12490 244 / 5e-82 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2)
Potri.006G033201 217 / 1e-71 AT3G12490 251 / 8e-86 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2)
Potri.009G022300 116 / 4e-33 AT3G12490 134 / 4e-41 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2)
Potri.001G225800 115 / 7e-33 AT3G12490 142 / 4e-44 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2)
Potri.006G014500 59 / 5e-11 AT5G47550 100 / 9e-29 Cystatin/monellin superfamily protein (.1)
Potri.002G235800 47 / 1e-06 AT2G31980 96 / 5e-26 PHYTOCYSTATIN 2 (.1)
Potri.014G149300 40 / 0.0003 AT2G31980 90 / 1e-23 PHYTOCYSTATIN 2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0121 Cystatin PF00031 Cystatin Cystatin domain
Representative CDS sequence
>Lus10008702 pacid=23161985 polypeptide=Lus10008702 locus=Lus10008702.g ID=Lus10008702.BGIv1.0 annot-version=v1.0
ATGGCCACCCCTCACGTCCTCGGAGGCATTCACGATTCCCCCGCCGCCGACTCCAACAGCGCTCACATTGAGGGGCTCGCTCGGTTCGCCGTCGACGAGC
ACAACAAGAAGGAGAATGCTGTGGTGGAGTTTCTGAGGGTTGTGGAAGCGAAAGAGCAAGTGGTGGCTGGGACGATGCATCATCTGGTTATAGAGGCGGC
TGATGCTGGTAAGAAGAAACTTTACCAGGCTAAAGTGTGGGTGAAGCCATGGATGAACTTCAAGGAACTGCAGGAGTTCAAGCATCATTCTGAGGATTCT
CCTCAGCTCACCTCTTCTGATCTTGGTGCTAAGAAAGGATGCCATGGATCTGGGCTGAAGGAGGTAGCAAATCATGACCCTGCAGTACAAGATGCAGCTA
ATCATGCTCTGAAGACAATTCAGCAGAGGTCCAACTCGCTGTTCCCTTATGAACTTCAAGAAGTTTCTGATGCCAAAGCTGATGTCTCTTCATACACGTC
CATTTCTCCCCTCCTTTTTCCTCCCCACAATTTCATTGTTATAAAGGAGCTATCTAACCTGTTGTGTTGTTTATGTGGGTTCGTTCCTGCATTGGAAATA
CAGGTGCTAGATGATTTTGCAAAATTCCATTTGGTTCTCAAGGTGAAGAGGGGAAGCACCGAAGAGAAGCTGAAGGTTGAGGTGCACAAGAACAATGAAG
GCACTTTCCATCTGAATCATATGGAGCCAGCTCACTGA
AA sequence
>Lus10008702 pacid=23161985 polypeptide=Lus10008702 locus=Lus10008702.g ID=Lus10008702.BGIv1.0 annot-version=v1.0
MATPHVLGGIHDSPAADSNSAHIEGLARFAVDEHNKKENAVVEFLRVVEAKEQVVAGTMHHLVIEAADAGKKKLYQAKVWVKPWMNFKELQEFKHHSEDS
PQLTSSDLGAKKGCHGSGLKEVANHDPAVQDAANHALKTIQQRSNSLFPYELQEVSDAKADVSSYTSISPLLFPPHNFIVIKELSNLLCCLCGFVPALEI
QVLDDFAKFHLVLKVKRGSTEEKLKVEVHKNNEGTFHLNHMEPAH

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G12490 ATCYS6, ATCYSB ARABIDOPSIS THALIANA PHYTOCYST... Lus10008702 0 1
AT3G27540 beta-1,4-N-acetylglucosaminylt... Lus10022281 3.5 0.8583
AT5G20870 O-Glycosyl hydrolases family 1... Lus10001183 5.2 0.8548
AT5G36220 CYP91A1, CYP81D... CYTOCHROME P450 91A1, cytochro... Lus10024820 5.3 0.8525
AT2G42920 Pentatricopeptide repeat (PPR-... Lus10012235 5.5 0.8501
AT4G24200 Transcription elongation facto... Lus10017630 5.9 0.8436
AT2G47830 Cation efflux family protein (... Lus10000033 6.2 0.8148
AT5G35790 G6PD1 glucose-6-phosphate dehydrogen... Lus10006386 7.7 0.8565
AT3G21870 CYCP2;1 cyclin p2;1 (.1) Lus10027148 8.8 0.8488
Lus10010597 10.4 0.8149
Lus10026168 10.5 0.7982

Lus10008702 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.