Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04945 357 / 8e-121 HIT-type Zinc finger family protein (.1.2.3) AT5G63830 45 / 5e-05 HIT-type Zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026116 [exp] 803 / 0 AT1G04945 356 / 6e-120 HIT-type Zinc finger family protein (.1.2.3) Lus10003211 [exp] 44 / 0.0001 AT5G63830 410 / 5e-142 HIT-type Zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G228000 [exp] 398 / 2e-136 AT1G04945 331 / 7e-111 HIT-type Zinc finger family protein (.1.2.3) Potri.003G145100 [exp] 43 / 0.0003 AT5G63830 396 / 3e-136 HIT-type Zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0175 [flax] [poplar] TRASH PF04438 [flax] [poplar] zf-HIT HIT zinc finger
Representative CDS sequence Show only first row Show all	>Lus10008703 pacid=23161959 polypeptide=Lus10008703 locus=Lus10008703.g ID=Lus10008703.BGIv1.0 annot-version=v1.0 ATGGAGGAGCAGCCGTCGCTGGGTCTCGGGGCTCCAACAGAGCAAAGCCCTAAACACAATCAGCTCCAAGAAGCTCGATCCACTGTAGTATTTTGCGCTG AGTGCCAGGAGAAGCAATCGAAATACAAGTGCCCAGGCTGCTCATTACGAACCTGCAGCCTCCCTTGCGTCAAATCACATAAGCTCCGTACTGGCTGCTC GGGAAAACGGGAAGTCGCGCCATTTCTCCCTATCTCTCAGTTCGACGATAATACACTTCTTTCAGATTATAACTTTCTGGAGGACGTGAAGAGAGTTGCG GATTCAGGTCAAAGGATGAGGTCTCAAATGCGTGTATACTCTCGTTATCGGTTACCGCCGAACCTTAAAACCCTTAAGAGTGTTGCATCAAGTCGCAGGA CAAATGTAATGATTCTTCCGAGTGGGATGTGGAGGAGGGAAAATAACCAGACTCGATACGACAATAGGAAAAAAGTGATCTTCTGGACAATAGAATGGAG ATTTCACTCAACTGGTGTTGTTACACTAGACCATGGAGTAAATGAAAATGCATCAATTTTCTCTGAAATCCAGAAGCATCTGCAGCCTGGACCGTGGAAA AACCAGTTGCAGCAGTTCTGTGAAGTTGATTTGGAATCTCTCAAGTGCTTCATACGCAAATATCCCAAGGGAAAATCACCTTTCCGCGAATTGGACATAA AGGCCCCTCTAAGGCAACAAATAGCTCATCTAAGCATCTTAGAGTACCCTGTCATCCATGTTTATCTCCCTTCACACAGTTACGAGTTCGAAGTTGTGAA GGACCTCCGCCCAGTGGCTTCTCATCGGCACGAAACCAAGAGTTCCATCAGCCATGATCAACAGAGCCCCAAAGGAGTTCCCTTCAAGGTGGAGGAGATT CAAGAGGAAGAAGAAGAAAATGGCTCTTCGGAAGTTCAGGTTTATGATCTGGCAAAAAAGTCTATGATTACTACAAGTCCAGGAAATAAGACTGGTCCTC AGAAAGCCACCACGGATTGCTCAACTGTTGTCGACAGTTCAGTCGCAAACGACTCTGAAACAGAGGACAAACGAGCTAGCATATTTGACGGAATGGATTT CAATTTCGACCCGAGCCTGCTGGATTCTTATTCGGATATACTTGCTGAGATAGATACAACAGACTTCCTGGATTTTGAAGGTGAATTGCCGATGGAGATG GAAGGAGACGAGGAGAGGGTTTTTGGGTCAAATCTGTCAGTGGAAGAGTTAGAAGAAGGGGAAATTGCCTAG
AA sequence Show only first row Show all	>Lus10008703 pacid=23161959 polypeptide=Lus10008703 locus=Lus10008703.g ID=Lus10008703.BGIv1.0 annot-version=v1.0 MEEQPSLGLGAPTEQSPKHNQLQEARSTVVFCAECQEKQSKYKCPGCSLRTCSLPCVKSHKLRTGCSGKREVAPFLPISQFDDNTLLSDYNFLEDVKRVA DSGQRMRSQMRVYSRYRLPPNLKTLKSVASSRRTNVMILPSGMWRRENNQTRYDNRKKVIFWTIEWRFHSTGVVTLDHGVNENASIFSEIQKHLQPGPWK NQLQQFCEVDLESLKCFIRKYPKGKSPFRELDIKAPLRQQIAHLSILEYPVIHVYLPSHSYEFEVVKDLRPVASHRHETKSSISHDQQSPKGVPFKVEEI QEEEEENGSSEVQVYDLAKKSMITTSPGNKTGPQKATTDCSTVVDSSVANDSETEDKRASIFDGMDFNFDPSLLDSYSDILAEIDTTDFLDFEGELPMEM EGDEERVFGSNLSVEELEEGEIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04945			HIT-type Zinc finger family pr...		Lus10008703 [exp]	0	1
AT1G50910			unknown protein		Lus10043058 [exp]	2.0	0.8647
AT4G03500			Ankyrin repeat family protein ...		Lus10026833 [exp]	2.4	0.8244
AT1G69630			F-box/RNI-like superfamily pro...		Lus10006318 [exp]	5.0	0.7607
AT3G50670		U1SNRNP, U1-70K	U1 small nuclear ribonucleopro...		Lus10026026 [exp]	7.1	0.8155
AT3G62330			Zinc knuckle (CCHC-type) famil...		Lus10025019 [exp]	7.4	0.7783
					Lus10021867 [exp]	7.7	0.7305
AT1G62350			Pentatricopeptide repeat (PPR)...		Lus10000892 [exp]	9.0	0.7861
AT1G03670			ankyrin repeat family protein ...		Lus10020209 [exp]	12.0	0.8057
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Lus10001223 [exp]	13.7	0.8138
AT5G23210		SCPL34	serine carboxypeptidase-like 3...		Lus10017392 [exp]	15.2	0.7539

Compare expression of checked genes

Lus10008703 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.