Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03630 152 / 7e-46 RNI-like superfamily protein (.1) AT4G05460 146 / 6e-43 RNI-like superfamily protein (.1) AT4G05490 136 / 6e-39 RNI-like superfamily protein (.1) AT4G05475 131 / 8e-37 RNI-like superfamily protein (.1) AT4G05470 125 / 2e-34 RNI-like superfamily protein (.1) AT5G52480 122 / 3e-34 RNI-like superfamily protein (.1.2) AT4G05497 102 / 2e-26 RNI-like superfamily protein (.1) AT5G57900 59 / 3e-10 SKIP1 SKP1 interacting partner 1 (.1) AT4G03635 49 / 1e-07 unknown protein AT4G30640 46 / 8e-06 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026115 [exp] 257 / 4e-86 AT4G05460 166 / 3e-49 RNI-like superfamily protein (.1) Lus10038528 [exp] 235 / 1e-76 AT4G05460 249 / 5e-81 RNI-like superfamily protein (.1) Lus10023277 [exp] 234 / 3e-76 AT4G05460 247 / 3e-80 RNI-like superfamily protein (.1) Lus10034452 [exp] 66 / 1e-12 AT5G57900 355 / 3e-123 SKP1 interacting partner 1 (.1) Lus10019104 [exp] 66 / 2e-12 AT5G57900 352 / 4e-122 SKP1 interacting partner 1 (.1) Lus10036483 [exp] 49 / 1e-06 AT4G08980 347 / 6e-120 F-BOX WITH WD-40 2 (.1.2.3.4.5) Lus10010351 [exp] 48 / 2e-06 AT4G08980 345 / 4e-119 F-BOX WITH WD-40 2 (.1.2.3.4.5) Lus10013444 [exp] 47 / 5e-06 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1) Lus10040998 [exp] 45 / 2e-05 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G104900 [exp] 64 / 9e-12 AT5G57900 377 / 8e-132 SKP1 interacting partner 1 (.1) Potri.002G099100 [exp] 55 / 7e-09 AT4G08980 352 / 1e-121 F-BOX WITH WD-40 2 (.1.2.3.4.5) Potri.005G088800 [exp] 47 / 6e-06 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1) Potri.016G019500 [exp] 42 / 0.0001 AT3G48880 76 / 7e-16 RNI-like superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008704 pacid=23161989 polypeptide=Lus10008704 locus=Lus10008704.g ID=Lus10008704.BGIv1.0 annot-version=v1.0 ATGAGCTGTGGGGGATTGCTTTCTCTCAGTATGGAGGAATCCGGCTCTGATAAACTGCTGAATGATATCGCTGATAAATCAAGCCAGCTTAAAAGTCTTC GACTCGTAGATGTCCTGGCATTTTCGGACCTAGGGCTCAGCACAGCAGTCCCGAAATTTCATTTCCTTGAAGAGCTGGAAATTTCTTACTGCACCTTTTC GTGTCATTCATTGCTTGCTGCTGGGCGCTGTTGGCCTTTCTTGAAGACACTAAAACTGAACCATACAGGGTTCAGGGGGGCTGGCTGGGAAGATGACTCG GAGGCAACAGCTATTGCAGACAACATGCCGGGTTTGCACCACCTTCAGATATTCGGGAACAAGCTAACGAATCATGGTTTGCAAGCCATTCTTGATCGTT GCAGACACTTGGAGTCGCTCGACCTTCGACAGTGTTTCAATTTGAAGTTGGAAGGGGATCTGGAGAAGAGATGCCGGCAGCAGATCAAGGGTCTGCGATG TCCTGAAGATTCAGTTGATGACTATCCCTACAGCGCAGCTTATGATGGATCATCTGAAGAGGATTATCCATCAGGATCCTCTGACTATGAGTTTGAAGAG GATTATCTATCAGAAGAATCCTCTGACTACGTGTTTTCCTCCGATGATGAGGAGCTCTCTGATGCAGAGTTTGATTAA
AA sequence Show only first row Show all	>Lus10008704 pacid=23161989 polypeptide=Lus10008704 locus=Lus10008704.g ID=Lus10008704.BGIv1.0 annot-version=v1.0 MSCGGLLSLSMEESGSDKLLNDIADKSSQLKSLRLVDVLAFSDLGLSTAVPKFHFLEELEISYCTFSCHSLLAAGRCWPFLKTLKLNHTGFRGAGWEDDS EATAIADNMPGLHHLQIFGNKLTNHGLQAILDRCRHLESLDLRQCFNLKLEGDLEKRCRQQIKGLRCPEDSVDDYPYSAAYDGSSEEDYPSGSSDYEFEE DYLSEESSDYVFSSDDEELSDAEFD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03630			RNI-like superfamily protein (...		Lus10008704 [exp]	0	1
AT1G10390			Nucleoporin autopeptidase (.1....		Lus10033254 [exp]	1.7	0.7351
AT5G10370			helicase domain-containing pro...		Lus10012749 [exp]	5.5	0.6852
AT5G05230			RING/U-box superfamily protein...		Lus10034237 [exp]	8.0	0.6659
AT5G10080			Eukaryotic aspartyl protease f...		Lus10019678 [exp]	8.3	0.7068
AT5G18420			unknown protein		Lus10027578 [exp]	9.4	0.6944
AT3G27260		GTE8	global transcription factor gr...		Lus10032076 [exp]	11.0	0.7261
AT3G22270			Topoisomerase II-associated pr...		Lus10012099 [exp]	17.8	0.6813
AT3G43590			zinc knuckle (CCHC-type) famil...		Lus10008437 [exp]	22.7	0.6595
AT4G19190			zinc knuckle (CCHC-type) famil...		Lus10037279 [exp]	31.7	0.6457
AT5G49010		EMB2812, SLD5	SYNTHETIC LETHALITY WITH DPB11...		Lus10033618 [exp]	45.4	0.6722

Compare expression of checked genes

Lus10008704 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.