Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38720 565 / 0 MAP65-5 microtubule-associated protein 65-5 (.1) AT4G26760 514 / 1e-177 MAP65-2 microtubule-associated protein 65-2 (.1) AT5G55230 490 / 3e-168 ATMAP65-1 microtubule-associated proteins 65-1 (.1.2) AT1G14690 443 / 1e-149 MAP65-7 microtubule-associated protein 65-7 (.1.2) AT2G01910 416 / 6e-139 ATMAP65-6 Microtubule associated protein (MAP65/ASE1) family protein (.1), Microtubule associated protein (MAP65/ASE1) family protein (.2) AT1G27920 397 / 2e-132 MAP65-8 microtubule-associated protein 65-8 (.1) AT5G51600 372 / 8e-121 ATMAP65-3, PLE PLEIADE, ARABIDOPSIS THALIANA MICROTUBULE-ASSOCIATED PROTEIN 65-3, Microtubule associated protein (MAP65/ASE1) family protein (.1) AT3G60840 338 / 2e-108 MAP65-4 microtubule-associated protein 65-4 (.1) AT5G62250 317 / 3e-101 MAP65-9 microtubule-associated protein 65-9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026114 [exp] 1082 / 0 AT2G38720 553 / 0.0 microtubule-associated protein 65-5 (.1) Lus10041635 [exp] 847 / 0 AT2G38720 550 / 0.0 microtubule-associated protein 65-5 (.1) Lus10032567 [exp] 505 / 6e-173 AT5G55230 850 / 0.0 microtubule-associated proteins 65-1 (.1.2) Lus10043178 [exp] 499 / 4e-170 AT5G55230 847 / 0.0 microtubule-associated proteins 65-1 (.1.2) Lus10031939 [exp] 434 / 7e-146 AT2G01910 838 / 0.0 Microtubule associated protein (MAP65/ASE1) family protein (.1), Microtubule associated protein (MAP65/ASE1) family protein (.2) Lus10035099 [exp] 430 / 3e-144 AT2G01910 822 / 0.0 Microtubule associated protein (MAP65/ASE1) family protein (.1), Microtubule associated protein (MAP65/ASE1) family protein (.2) Lus10015684 [exp] 415 / 5e-137 AT5G51600 759 / 0.0 PLEIADE, ARABIDOPSIS THALIANA MICROTUBULE-ASSOCIATED PROTEIN 65-3, Microtubule associated protein (MAP65/ASE1) family protein (.1) Lus10037691 [exp] 414 / 8e-137 AT5G51600 768 / 0.0 PLEIADE, ARABIDOPSIS THALIANA MICROTUBULE-ASSOCIATED PROTEIN 65-3, Microtubule associated protein (MAP65/ASE1) family protein (.1) Lus10015789 [exp] 404 / 2e-134 AT1G27920 673 / 0.0 microtubule-associated protein 65-8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G192400 [exp] 736 / 0 AT2G38720 555 / 0.0 microtubule-associated protein 65-5 (.1) Potri.011G092500 [exp] 552 / 0 AT5G55230 863 / 0.0 microtubule-associated proteins 65-1 (.1.2) Potri.001G356500 [exp] 517 / 7e-179 AT5G55230 853 / 0.0 microtubule-associated proteins 65-1 (.1.2) Potri.008G139700 [exp] 432 / 1e-145 AT2G01910 778 / 0.0 Microtubule associated protein (MAP65/ASE1) family protein (.1), Microtubule associated protein (MAP65/ASE1) family protein (.2) Potri.003G173300 [exp] 429 / 4e-144 AT1G27920 655 / 0.0 microtubule-associated protein 65-8 (.1) Potri.015G131400 [exp] 403 / 1e-132 AT5G51600 728 / 0.0 PLEIADE, ARABIDOPSIS THALIANA MICROTUBULE-ASSOCIATED PROTEIN 65-3, Microtubule associated protein (MAP65/ASE1) family protein (.1) Potri.001G055100 [exp] 394 / 3e-130 AT1G27920 623 / 0.0 microtubule-associated protein 65-8 (.1) Potri.014G070100 [exp] 392 / 2e-128 AT5G51600 451 / 5e-149 PLEIADE, ARABIDOPSIS THALIANA MICROTUBULE-ASSOCIATED PROTEIN 65-3, Microtubule associated protein (MAP65/ASE1) family protein (.1) Potri.012G129600 [exp] 391 / 6e-128 AT5G51600 761 / 0.0 PLEIADE, ARABIDOPSIS THALIANA MICROTUBULE-ASSOCIATED PROTEIN 65-3, Microtubule associated protein (MAP65/ASE1) family protein (.1) Potri.001G032566 [exp] 162 / 2e-47 AT2G38720 135 / 6e-38 microtubule-associated protein 65-5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03999 [flax] [poplar] MAP65_ASE1 Microtubule associated protein (MAP65/ASE1 family)
Representative CDS sequence Show only first row Show all	>Lus10008705 pacid=23161927 polypeptide=Lus10008705 locus=Lus10008705.g ID=Lus10008705.BGIv1.0 annot-version=v1.0 ATGTCGGCGAAATCACCGGCTCTCATATCTCCCTCTCGGACCGCTTGCCACTCACTCCTCCAAGAACTACAGGTAATATGGAGTGAAATTGGGGAGCAAG AAGGTGAAATGGACAGGATGCTTGAGCAACTTGAACAAGAGTGCCTTGACATCTACCGTAGAAAGGTTGATCTCACTAGAAAACACAAAGCTGAATTGGC TCAGTCATTGGCTGAGGGAGAAACTGAAATCGCAGACCTTGTTTCTGCTCTTGGGGAAACTGCCTCGTTTTCCCAGAGGGTGAAAGGTACTTTAAAGCAG CAATTATCTGCTGTGAAACCGGTTTTGCAAGACTTGAGACAGAGGAAACAAGCACGGATGAGTGAGTTTTATGAAATTCAGTCGCAGATTGCTCAAATCT GCGCTGAAATAGCTGGGAAAGATATTTCTAGCTACTCCGGTGATCTTCAAATTGATGAGTGCGATTTGACCGTGAAGAGATTGGGGGAGCTTAAGTCACA CCTCAAGGAACTTCAGACAGAAAAGAACTTACGTCTGCATAAAGTTAGCAGCTCTATTGCTAAAATTCAAGAGCTCTCAGTCATAATGTCTGTCGATTAC TCCAAAACTGTTGCTGATATCCATCCCTCCTTAAATGATCATGCTCAGCCAAAGAGCATAAGCAATGACACACTAGCTCGATTAACTAGGGTGATTCAAT CATTAAAGCGGGAGAAGCAGGACAGACTACATAAGCTCCAACATCTTGGGAAGAAACTGGTAGAGCTTTGGGATCTGATGGACACAGATATAGAGGAACA ACAAAAATTTGATCATGTTACTTCATTAATTTCTTCCTCAGTGGATGAGGCATCAAAACAGGGTTGCCTTGCCCTTGAAGTCATTGAGCAGGCTGAGGTT GAACTTGAAAGACTGAATGTTCTCAAAGCCAGCAAGATGAAGGAGTTGGTGTTGAAGAGACAGATTGAGCTGGAAGCACTATACAGAGATGTTCATGTGG ATATAGATAGTGATGCAGCAAGGGAGATGCTTATCAGTCTCATTGAATCTGGTAACGTCGAGCTCTCTGACCTGCTTTCAAGTATAGACGACCAGATAAC AAATGCCAAAGAGCTAGCAGTAAGCCGGAAGGAGGTTTTAGACAAGATGGAGAAATGGAAACATGCATCTGAGGAAGAAAAGTGGCTTGAAGACTATGAA AAGGACCAAAATCGGTACAATGCCGGGAGAGGTGCGCATAAAAATTTGAAACGTGCAGAGAAGGCAAGAATTTTGGTGGGAAAATTACCATCTATGGTTG AAAATCTGACTTCAAAAGTTAAAGCCTGGGAATCGGAGAGAGGCCTTACATTCCAGTATGATAAGGCTCCTCTGTTACGGACGTTGGAGGAATATATGGC GATGAGGCAGGAAAGGGAAGGCGAGAAGCGTCGAATGAAGGAGCAGAAACGTCTGCAGGAGCAAATGGCTGCGGAGAAAGAGTCTATTTATGGCTCACGG CCGAAGAAAGTCCTCGGTCAAAACACCAGCACCGCCAATACCATGTTCGGAACGCCTATGGGACGATCATTGGGGCGTCAGGCAGCATCAAGTGCGAAGG AACGTAGAGAGAGCAGGTACCATAACGTGACTCCTATCAACTATGTAGCGCTCCCAAAGGACGACCACCCTGCTTCTCGTGGGTAA
AA sequence Show only first row Show all	>Lus10008705 pacid=23161927 polypeptide=Lus10008705 locus=Lus10008705.g ID=Lus10008705.BGIv1.0 annot-version=v1.0 MSAKSPALISPSRTACHSLLQELQVIWSEIGEQEGEMDRMLEQLEQECLDIYRRKVDLTRKHKAELAQSLAEGETEIADLVSALGETASFSQRVKGTLKQ QLSAVKPVLQDLRQRKQARMSEFYEIQSQIAQICAEIAGKDISSYSGDLQIDECDLTVKRLGELKSHLKELQTEKNLRLHKVSSSIAKIQELSVIMSVDY SKTVADIHPSLNDHAQPKSISNDTLARLTRVIQSLKREKQDRLHKLQHLGKKLVELWDLMDTDIEEQQKFDHVTSLISSSVDEASKQGCLALEVIEQAEV ELERLNVLKASKMKELVLKRQIELEALYRDVHVDIDSDAAREMLISLIESGNVELSDLLSSIDDQITNAKELAVSRKEVLDKMEKWKHASEEEKWLEDYE KDQNRYNAGRGAHKNLKRAEKARILVGKLPSMVENLTSKVKAWESERGLTFQYDKAPLLRTLEEYMAMRQEREGEKRRMKEQKRLQEQMAAEKESIYGSR PKKVLGQNTSTANTMFGTPMGRSLGRQAASSAKERRESRYHNVTPINYVALPKDDHPASRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38720		MAP65-5	microtubule-associated protein...		Lus10008705 [exp]	0	1
AT4G32000			Protein kinase superfamily pro...		Lus10002328 [exp]	1.0	0.9782
AT5G40030			Protein kinase superfamily pro...		Lus10032185 [exp]	2.0	0.9745
AT5G40030			Protein kinase superfamily pro...		Lus10014501 [exp]	3.9	0.9718
AT4G35240			Protein of unknown function (D...		Lus10025077 [exp]	4.0	0.9558
AT3G29300			unknown protein		Lus10023634 [exp]	4.2	0.9511
AT1G09200			Histone superfamily protein (....		Lus10005271 [exp]	5.3	0.9626
AT3G29300			unknown protein		Lus10034904 [exp]	7.4	0.9574
AT5G58280	B3		AP2/B3-like transcriptional fa...		Lus10017434 [exp]	9.2	0.9567
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Lus10024019 [exp]	11.0	0.9439
AT5G59010			Protein kinase protein with te...		Lus10016454 [exp]	11.4	0.9310

Compare expression of checked genes

Lus10008705 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.