Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07050 456 / 3e-160 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G40900 330 / 1e-110 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G21890 315 / 5e-105 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G56620 315 / 5e-105 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G37460 302 / 4e-100 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G44800 301 / 1e-99 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G39510 296 / 6e-98 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08300 296 / 1e-97 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08290 275 / 2e-89 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT5G13670 246 / 3e-78 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026113 [exp] 665 / 0 AT5G07050 537 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008708 [exp] 611 / 0 AT5G07050 552 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10026112 [exp] 605 / 0 AT5G07050 555 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10041634 [exp] 538 / 0 AT5G07050 557 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10028030 [exp] 310 / 3e-103 AT4G08300 455 / 8e-161 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10003738 [exp] 310 / 4e-103 AT4G08300 453 / 6e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10005965 [exp] 303 / 2e-100 AT2G39510 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10029465 [exp] 296 / 2e-97 AT2G39510 456 / 1e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10040311 [exp] 295 / 2e-97 AT2G39510 482 / 2e-171 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G192500 [exp] 501 / 4e-178 AT5G07050 546 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G032500 [exp] 493 / 1e-174 AT5G07050 530 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.016G031400 [exp] 455 / 1e-159 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G033500 [exp] 443 / 6e-155 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G085100 [exp] 330 / 9e-111 AT1G21890 481 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176200 [exp] 310 / 3e-103 AT4G08300 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.010G209200 [exp] 305 / 3e-101 AT2G39510 503 / 3e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176100 [exp] 302 / 3e-100 AT4G08290 427 / 2e-149 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.008G051500 [exp] 300 / 3e-99 AT2G39510 472 / 4e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G082700 [exp] 283 / 8e-93 AT2G37460 488 / 4e-174 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10008706 pacid=23161983 polypeptide=Lus10008706 locus=Lus10008706.g ID=Lus10008706.BGIv1.0 annot-version=v1.0 ATGGAGAAGGTTGGATTTCTTGAGACTTCAAAGCCATACTTTGCAATGGTAGCATTGCAGTTTGGGTATGCTGGGATGAACATCATCACCAAAGTGTCCC TCAACCATGGCATGAGCCACTATGTCCTCGTCGTCTACCGTCACGCCATTGCAACTATAGTTATTGCTCCTTTCGCTCTTTTCTTCGAAAGAAAAGGCCA GCCCAAGATCACCTTCGGTGTCTTCCTCCAACTTTTCGTCCTTGGCCTACTTGGACCTGTGATAGACCAAAATTTCTACTACGCCGGGCTGAAGTACACA TCCCCAACATTCTCATGCGCAATGAGCAACATGCTCCCCGCCATGACATTTGTGATGGCAGTCATCTGCCGGATGGAAATCCTAGACCTGAAGAAAGTGA GGTGCCACGCCAAGTTGATAGGGACACTAGTGACGGTAGCAGGAGCAATGCTAATGACTTTGTACAAAGGACCAATCGTCAATCTGGTTTGGTCTAAAAA TGCACACCAATCTACAGGAACTGAAACCAGCACTGCCAACAGTGACAAAGATTGGTTCAAGGGTTCCATTCTGCTCATCCTAGCCACTCTTGCTTGGGCC ACTCTCTTTGTCTTGCAAACCAAGGCATTGAAGACCTATAAGAACCATCAGCTGTCATTAACAACACTAGTGTGCTTCATGGGGACTGTCCAAGCAATTG CTGTCACTCTTGTGGTGGAACACAATCCTTCTGCCTGGAGGATTGGCTTTGACATGAACCTCCTTGCTGCTGCCTATGCTGGGATTTTTGCATCAAGCCT TTCATACTATGTTCAAGGAATTGTGATCAAGAAGAAAGGACCGGTTTTCGCCACCGCATTCAGCCCCTTGATGATGATCGTTGTAGCAATCATGGGATCT TTCATCTTGGCTGAAAAGATATTCCTTGGAGGGATCATAGGATCTGTGTTGATAGTAATAGGACTGTACTCAGTTCTGTGGGGCAAGCAGAAGGAGAAAA TGGACATGGATGCTGGTGATAGAATTCCTGATCCTGCGAAGGGATCAGGATTAGTTAACAACGGGAACTCAGTGTCGACAGACATCGAAGCTAATAACGA AGCCAACGGTAGCAAACAGATGGCTGCTATGGTTGCACCCATTTGCATGCCTTTGGCAGATGAAGTTCACCTAAGCCAAGAAACCAATGCAACTTGA
AA sequence Show only first row Show all	>Lus10008706 pacid=23161983 polypeptide=Lus10008706 locus=Lus10008706.g ID=Lus10008706.BGIv1.0 annot-version=v1.0 MEKVGFLETSKPYFAMVALQFGYAGMNIITKVSLNHGMSHYVLVVYRHAIATIVIAPFALFFERKGQPKITFGVFLQLFVLGLLGPVIDQNFYYAGLKYT SPTFSCAMSNMLPAMTFVMAVICRMEILDLKKVRCHAKLIGTLVTVAGAMLMTLYKGPIVNLVWSKNAHQSTGTETSTANSDKDWFKGSILLILATLAWA TLFVLQTKALKTYKNHQLSLTTLVCFMGTVQAIAVTLVVEHNPSAWRIGFDMNLLAAAYAGIFASSLSYYVQGIVIKKKGPVFATAFSPLMMIVVAIMGS FILAEKIFLGGIIGSVLIVIGLYSVLWGKQKEKMDMDAGDRIPDPAKGSGLVNNGNSVSTDIEANNEANGSKQMAAMVAPICMPLADEVHLSQETNAT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07050			nodulin MtN21 /EamA-like trans...		Lus10008706 [exp]	0	1
AT3G05950			RmlC-like cupins superfamily p...		Lus10035278 [exp]	2.4	0.8467
AT1G72490			unknown protein		Lus10013160 [exp]	3.0	0.8285
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10038312 [exp]	4.0	0.8638
AT5G07050			nodulin MtN21 /EamA-like trans...		Lus10026113 [exp]	6.5	0.7824
					Lus10022893 [exp]	7.1	0.7973
AT5G02070			Protein kinase family protein ...		Lus10020667 [exp]	9.2	0.8024
AT5G52790			CBS domain-containing protein ...		Lus10027528 [exp]	10.6	0.7157
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10018418 [exp]	12.2	0.7100
					Lus10021739 [exp]	16.9	0.7487
AT1G17615			Disease resistance protein (TI...		Lus10005374 [exp]	17.3	0.6598

Compare expression of checked genes

Lus10008706 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.