Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07050 474 / 3e-167 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G40900 345 / 1e-116 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G21890 331 / 3e-111 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G56620 328 / 2e-110 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G37460 309 / 8e-103 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G44800 308 / 2e-102 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G39510 301 / 1e-99 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08300 297 / 4e-98 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08290 288 / 1e-94 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT5G13670 259 / 2e-83 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026112 [exp] 699 / 0 AT5G07050 555 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008706 [exp] 619 / 0 AT5G07050 543 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10026113 [exp] 614 / 0 AT5G07050 537 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10041634 [exp] 572 / 0 AT5G07050 557 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10028030 [exp] 311 / 2e-103 AT4G08300 455 / 8e-161 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10003738 [exp] 310 / 3e-103 AT4G08300 453 / 6e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10005965 [exp] 306 / 1e-101 AT2G39510 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10029465 [exp] 305 / 3e-101 AT2G39510 456 / 1e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10040311 [exp] 303 / 1e-100 AT2G39510 482 / 2e-171 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G192500 [exp] 531 / 0 AT5G07050 546 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G032500 [exp] 529 / 0 AT5G07050 530 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.016G031400 [exp] 483 / 8e-171 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G033500 [exp] 476 / 4e-168 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G085100 [exp] 337 / 2e-113 AT1G21890 481 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176200 [exp] 317 / 6e-106 AT4G08300 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G051500 [exp] 310 / 3e-103 AT2G39510 472 / 4e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.010G209200 [exp] 308 / 2e-102 AT2G39510 503 / 3e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176100 [exp] 306 / 5e-102 AT4G08290 427 / 2e-149 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.006G082700 [exp] 300 / 9e-100 AT2G37460 488 / 4e-174 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10008708 pacid=23161992 polypeptide=Lus10008708 locus=Lus10008708.g ID=Lus10008708.BGIv1.0 annot-version=v1.0 ATGGAGAAGCTTGGGTGCCTTGAGACATCCAAACCATACTTTGCAATGATAGCATTGCAATTTGGGTATGCTGGGATGAACATCATCACCAAGGTCTCCC TCAACCAGGGCATGAGCCACTATGTCCTTGTTGTCTATCGTCACGCCATTGCAACTGCGGTAATCGCTCCATTCGCTCTCTTCTTCGAAAGGAAAGGCCA GCCTAAGATCACCTTCCGTGTCTTCCTCCAACTTTTCGTCCTTGGTCTTCTCGGACCTGTGATAGACCAGAACTTCTACTACGCCGGGCTGAAGTACACG TCGCCAACGTTCTCATGTGCAATGAGCAACATGCTCCCCGCCATGACGTTTGTGATGGCCGTCATCTGCAGAATGGAGATCCTAGACATGAAGAAAGTGA GGTGTCAAGCCAAGTTGATAGGGACAATAGTAACTGTAGTAGGAGCCATGCTAATGACTCTGTACAAAGGACCAATCGTCAATCTGGTTTGGTCCAAAAA TGCGCACCAATCTTCAGGAACTGAAACCACCGATGCCAACAGTGACAAAGATTGGTTAAAGGGTTCCATTCTCCTCATCCTCGCCACTCTTGCTTGGGCC ACACTCTTTGTCTTACAAACCAAGGCATTGAAGACCTACAAGAACCATCAGCTGTCCTTGACAACACTGGTGTGCTTTATTGGGACAGTCCAAGCAGTTG CTGTCACTTTAGTGATGGAACATAAACCTTCTGCCTGGAGGATTGGCTTCGACATGAACCTCCTTGCCGCTGCCTATGCTGGGATTGTGACATCAAGCAT ATCATACTATGTTCAAGGAATTGTGATCAAGAAGAAAGGTCCGGTTTTCGCCACGGCTTTCAGCCCTTTGATGATGATCGTTGTGGCAATCATGGGATCT TTCATTTTGGCTGAAAAGATTTTCCTAGGAGGGATCATTGGATCTGTGTTGATAGTGATAGGGCTGTATGCAGTCCTGTGGGGGAAACAGAAGGAGAAAA TGGACATGGATGCTGCTGATGAAATCCCTGAACCGGTGAAGGAAAATGGGAACTCAATTGCAGCCATTGTTGAAGATATTGAAGCAAATCAGGTGGAGAA AACAGAAGCTAAGCAGATTGCTATGATAGCACCAATTAGCATGCCTTTTGCAGATGAAGTTTCAATGGAGAAACTGAGCCAGGAGACTAACAGAAGTTAG
AA sequence Show only first row Show all	>Lus10008708 pacid=23161992 polypeptide=Lus10008708 locus=Lus10008708.g ID=Lus10008708.BGIv1.0 annot-version=v1.0 MEKLGCLETSKPYFAMIALQFGYAGMNIITKVSLNQGMSHYVLVVYRHAIATAVIAPFALFFERKGQPKITFRVFLQLFVLGLLGPVIDQNFYYAGLKYT SPTFSCAMSNMLPAMTFVMAVICRMEILDMKKVRCQAKLIGTIVTVVGAMLMTLYKGPIVNLVWSKNAHQSSGTETTDANSDKDWLKGSILLILATLAWA TLFVLQTKALKTYKNHQLSLTTLVCFIGTVQAVAVTLVMEHKPSAWRIGFDMNLLAAAYAGIVTSSISYYVQGIVIKKKGPVFATAFSPLMMIVVAIMGS FILAEKIFLGGIIGSVLIVIGLYAVLWGKQKEKMDMDAADEIPEPVKENGNSIAAIVEDIEANQVEKTEAKQIAMIAPISMPFADEVSMEKLSQETNRS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07050			nodulin MtN21 /EamA-like trans...		Lus10008708 [exp]	0	1
AT5G07050			nodulin MtN21 /EamA-like trans...		Lus10026112 [exp]	3.0	0.8516
AT1G61680		ATTPS14	terpene synthase 14 (.1.2)		Lus10018392 [exp]	6.2	0.8170
AT1G47670			Transmembrane amino acid trans...		Lus10003339 [exp]	11.6	0.7891
AT2G40460			Major facilitator superfamily ...		Lus10034206 [exp]	12.5	0.7618
					Lus10008773 [exp]	12.9	0.6276
					Lus10026092 [exp]	15.0	0.7805
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10033054 [exp]	19.2	0.7228
AT4G32630			ArfGap/RecO-like zinc finger d...		Lus10022113 [exp]	22.8	0.7430
AT3G51895		AST12, ATST1, S...	sulfate transporter 3;1 (.1)		Lus10039364 [exp]	25.2	0.7651
AT5G56610			Phosphotyrosine protein phosph...		Lus10034998 [exp]	27.4	0.7051

Compare expression of checked genes

Lus10008708 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.