Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16180 577 / 0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2) AT3G06170 437 / 2e-152 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) AT3G24460 148 / 2e-40 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) AT2G33205 140 / 2e-37 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) AT4G13345 139 / 3e-37 MEE55 maternal effect embryo arrest 55, Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026111 [exp] 652 / 0 AT1G16180 667 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2) Lus10034023 [exp] 425 / 3e-147 AT3G06170 648 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10004430 [exp] 416 / 1e-143 AT3G06170 625 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10017728 [exp] 125 / 1e-31 AT3G24460 575 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10033091 [exp] 115 / 1e-28 AT3G24460 562 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10011768 [exp] 100 / 7e-23 AT2G33205 457 / 2e-160 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10023690 [exp] 99 / 2e-22 AT2G33205 438 / 3e-152 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G186500 [exp] 590 / 0 AT1G16180 587 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2) Potri.001G038100 [exp] 577 / 0 AT1G16180 584 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2) Potri.008G201900 [exp] 401 / 5e-138 AT3G06170 605 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Potri.018G076000 [exp] 139 / 5e-37 AT3G24460 622 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Potri.003G174200 [exp] 120 / 6e-30 AT2G33205 553 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03348 [flax] [poplar] Serinc Serine incorporator (Serinc)
Representative CDS sequence Show only first row Show all	>Lus10008709 pacid=23161923 polypeptide=Lus10008709 locus=Lus10008709.g ID=Lus10008709.BGIv1.0 annot-version=v1.0 ATGTGGGCGGCTTCCTGTCTCGCGTCGTGCTGTGCGGCCTGCGCTTGCGATGCTTGTCGCACCGTCGTCTCCGGGATAAGCCGGAGGTCTGCTAGAATCG CCTACTGCGGTCTCTTTGGCCTTTCTCTGATTGTCTCCTGGATTCTTCGTGAGGTCGCTGCACCGCTCCTGGAGAGTATTCCATGGATCAATCATTTCCA TAAGACACCTGATAGGGAGTGGTTCGAAACTGATGCTGTGCTGCGCGTTAGTCTGGGAAATTTTATCTTCTTTACCATTCTGGCAGTTATGATGGTTGGC GTTAAGAGTCAGAAGGATCCTCGTGACAGTTTGCACCATGGTGGCTGGATGATGAAGGTCATCTGCTGGTTCCTTCTGGTCATCTTTATGTTCTTCCTTC CAAATGAGATCATCAGCTTTTATGAGTCCACATCCAAATTTGGTTCAGGGCTGTTTCTTCTTGTTCAAGTGGTGCTTTTGTTGGATTTTGTTCATGGATG GAATGACAAATGGGTTGGATATGATGAACAGTTTTGGTACATAGCACTTCTTGTCGTTTCACTTGTATGCTATGTAGCAACATTCGTGTTCTCAGGGTTT CTCTTCCACTGGTTCACACCTTCCCGTCAGGATTGTGGATTGAACACCTTCTTCATTGTCATGGTTCTGATTTTTGCGTTTGTTTTCGCTGTTGTTGCAC TTCACCCTGCTGTGAATGGAAGCATTTTGCCTGCTTCAGTTATATCGCTGTACTGCATGTATCTGTGCTATAGCGGATTATCCAGCGAGCCAAGGGACTA CGCATGCAATGGTCTTCACAAGCATTCGAAGGCTGTCTCGACCGGTACTCTTACTCTAGGTCTCCTCACAACTGTTCTATCAGTTGTTTACTCCGCCGTC CGTGCTGGATCTTCCACGACACTGCTTTCTCCTCCAAGCTCACCCCGAGCAGGTAAGCCATTGCTGCCTATGGACAGCAAGGCGGAAGACCAGGAAGAGA AGGAGCATGCTAAGCCTGTCACTTACTCGTACGCTTTCTTCCACATCATCTTCTCTCTTGCTAGCATGTACTCTGCAATGCTTTTGACTGGGTGGTCCGG CTCTGTCGGGGAGAGTGGAAAGTTGGTCGATGTTGGGTGGCCATCGGTCTGGGTCCGTATCCTTACGAGCTGGGCAACTGCAGGTCTCTACATTTGGTCC GTCGTCGCTCCAATTATGTTCCCAGATAGGGAGTTCTAA
AA sequence Show only first row Show all	>Lus10008709 pacid=23161923 polypeptide=Lus10008709 locus=Lus10008709.g ID=Lus10008709.BGIv1.0 annot-version=v1.0 MWAASCLASCCAACACDACRTVVSGISRRSARIAYCGLFGLSLIVSWILREVAAPLLESIPWINHFHKTPDREWFETDAVLRVSLGNFIFFTILAVMMVG VKSQKDPRDSLHHGGWMMKVICWFLLVIFMFFLPNEIISFYESTSKFGSGLFLLVQVVLLLDFVHGWNDKWVGYDEQFWYIALLVVSLVCYVATFVFSGF LFHWFTPSRQDCGLNTFFIVMVLIFAFVFAVVALHPAVNGSILPASVISLYCMYLCYSGLSSEPRDYACNGLHKHSKAVSTGTLTLGLLTTVLSVVYSAV RAGSSTTLLSPPSSPRAGKPLLPMDSKAEDQEEKEHAKPVTYSYAFFHIIFSLASMYSAMLLTGWSGSVGESGKLVDVGWPSVWVRILTSWATAGLYIWS VVAPIMFPDREF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16180			Serinc-domain containing serin...		Lus10008709 [exp]	0	1
AT5G53330			Ubiquitin-associated/translati...		Lus10014944 [exp]	1.0	0.9246
AT3G49390		CID10	CTC-interacting domain 10 (.1....		Lus10032942 [exp]	1.4	0.9244
AT1G06570		HPPD, HPD, PDS1	4-hydroxyphenylpyruvate dioxyg...		Lus10029820 [exp]	1.7	0.9194
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Lus10043325 [exp]	2.0	0.9105
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Lus10025136 [exp]	2.2	0.9006
AT3G60800			DHHC-type zinc finger family p...		Lus10024561 [exp]	4.0	0.8931
AT5G41350			RING/U-box superfamily protein...		Lus10024635 [exp]	4.2	0.8842
AT1G55915			zinc ion binding (.1)		Lus10037337 [exp]	4.4	0.8569
AT5G01960			RING/U-box superfamily protein...		Lus10011027 [exp]	5.1	0.8716
AT1G20110			RING/FYVE/PHD zinc finger supe...		Lus10013571 [exp]	5.3	0.8961

Compare expression of checked genes

Lus10008709 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.