Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79650 228 / 7e-75 AtAO1, RAD23B, RAD23 RADIATION SENSITIVE23B, Arabidopsis thaliana aldehyde oxidase 1, Rad23 UV excision repair protein family (.1.2.3.4) AT1G16190 225 / 4e-73 RAD23A RADIATION SENSITIVE23A, Rad23 UV excision repair protein family (.1) AT5G38470 170 / 4e-52 RAD23D RADIATION SENSITIVE23D, Rad23 UV excision repair protein family (.1.2) AT3G02540 112 / 3e-30 RAD23C, RAD23-3 RADIATION SENSITIVE23C, PUTATIVE DNA REPAIR PROTEIN RAD23-3, Rad23 UV excision repair protein family (.1.2.3) AT5G16090 86 / 3e-21 unknown protein AT1G53930 48 / 5e-07 Ubiquitin-like superfamily protein (.1) AT2G35635 47 / 8e-07 UBQ7, RUB2 RELATED TO UBIQUITIN 2, ubiquitin 7 (.1) AT1G31340 47 / 8e-07 NEDD8, ATRUB1, RUB1 ARABIDOPSIS THALIANA RELATED TO UBIQUITIN 1, related to ubiquitin 1 (.1) AT1G55060 45 / 5e-06 UBQ12 ubiquitin 12 (.1) AT5G37640 45 / 1e-05 UBQ9 ubiquitin 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026110 [exp] 320 / 1e-110 AT1G79650 519 / 0.0 RADIATION SENSITIVE23B, Arabidopsis thaliana aldehyde oxidase 1, Rad23 UV excision repair protein family (.1.2.3.4) Lus10034307 [exp] 176 / 6e-53 AT3G02540 493 / 1e-173 RADIATION SENSITIVE23C, PUTATIVE DNA REPAIR PROTEIN RAD23-3, Rad23 UV excision repair protein family (.1.2.3) Lus10034308 [exp] 167 / 1e-50 AT3G02540 491 / 7e-174 RADIATION SENSITIVE23C, PUTATIVE DNA REPAIR PROTEIN RAD23-3, Rad23 UV excision repair protein family (.1.2.3) Lus10041465 [exp] 166 / 5e-50 AT3G02540 494 / 4e-175 RADIATION SENSITIVE23C, PUTATIVE DNA REPAIR PROTEIN RAD23-3, Rad23 UV excision repair protein family (.1.2.3) Lus10030894 [exp] 44 / 2e-05 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2) Lus10030595 [exp] 44 / 2e-05 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2) Lus10008873 [exp] 42 / 3e-05 AT3G52590 261 / 5e-92 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Lus10018367 [exp] 43 / 4e-05 AT4G05320 452 / 4e-164 polyubiquitin 10 (.1.2.3.4.5.6) Lus10041464 [exp] 0 / 1 AT3G02540 411 / 6e-142 RADIATION SENSITIVE23C, PUTATIVE DNA REPAIR PROTEIN RAD23-3, Rad23 UV excision repair protein family (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G038000 [exp] 237 / 6e-78 AT1G79650 456 / 6e-161 RADIATION SENSITIVE23B, Arabidopsis thaliana aldehyde oxidase 1, Rad23 UV excision repair protein family (.1.2.3.4) Potri.003G186600 [exp] 226 / 2e-73 AT1G79650 474 / 4e-168 RADIATION SENSITIVE23B, Arabidopsis thaliana aldehyde oxidase 1, Rad23 UV excision repair protein family (.1.2.3.4) Potri.004G100700 [exp] 184 / 3e-57 AT3G02540 476 / 8e-168 RADIATION SENSITIVE23C, PUTATIVE DNA REPAIR PROTEIN RAD23-3, Rad23 UV excision repair protein family (.1.2.3) Potri.017G114000 [exp] 182 / 2e-56 AT3G02540 369 / 9e-126 RADIATION SENSITIVE23C, PUTATIVE DNA REPAIR PROTEIN RAD23-3, Rad23 UV excision repair protein family (.1.2.3) Potri.008G119700 [exp] 159 / 2e-47 AT5G38470 380 / 3e-131 RADIATION SENSITIVE23D, Rad23 UV excision repair protein family (.1.2) Potri.010G126200 [exp] 156 / 4e-46 AT5G38470 367 / 1e-125 RADIATION SENSITIVE23D, Rad23 UV excision repair protein family (.1.2) Potri.007G067500 [exp] 47 / 6e-07 AT1G31340 224 / 1e-76 ARABIDOPSIS THALIANA RELATED TO UBIQUITIN 1, related to ubiquitin 1 (.1) Potri.005G096700 [exp] 47 / 7e-07 AT1G31340 270 / 2e-94 ARABIDOPSIS THALIANA RELATED TO UBIQUITIN 1, related to ubiquitin 1 (.1) Potri.005G198700 [exp] 45 / 5e-06 AT1G31340 293 / 1e-103 ARABIDOPSIS THALIANA RELATED TO UBIQUITIN 1, related to ubiquitin 1 (.1) Potri.002G062500 [exp] 45 / 5e-06 AT1G31340 296 / 9e-105 ARABIDOPSIS THALIANA RELATED TO UBIQUITIN 1, related to ubiquitin 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00240 [flax] [poplar] ubiquitin Ubiquitin family CL0214 [flax] [poplar] UBA PF00627 [flax] [poplar] UBA UBA/TS-N domain
Representative CDS sequence Show only first row Show all	>Lus10008710 pacid=23161934 polypeptide=Lus10008710 locus=Lus10008710.g ID=Lus10008710.BGIv1.0 annot-version=v1.0 ATGAAGCTCTCCGTTAAAACTCTCAAAGGCACCCGTTTCGAAATTAGGGTTCAGCCCACAGACACCGTAATGGCTGTGAAGAAGCAAATTGAGGACGTGC AAGGCAAAGACAATTACCCTTGTGCTCAGCAGCTGTTGATCCACAATGGCAAAGTCTTGAAAGATGAGACTACTTTGGCCGCCAACGAAGTCTCTGAAGA TGGCTTTCTCGTTGTTATGCTTAGTAAGAGCAAAACATCTGGTTCTGCTGCGGGGCTGTCCAGTCAGCCTGCATCTGCAACTCCACCTACAGCTGCGCAA ACCTCAAATTCAACTCCAGCACCTGCACAAGCAACGGTTTCACAGAGCACGGCGTCTGTTTCTGATGCAGCAACAGCCAATCCACCAACTGACACGTACA GTGAAGCTGCTTCAAATTTAGTTGGTGGTAGCAGCCTAGAGCAGACTATTCAGCAAATAATGGATATTGGCGGTGGGAACTGGGGCAAAGAAGCTGTTAC TCGTGCTCTTAGAGCTGCCTATAACAATCCAGAACGAGCAATAGATTACTTCTACTCTGTGAGTATTGGTTAA
AA sequence Show only first row Show all	>Lus10008710 pacid=23161934 polypeptide=Lus10008710 locus=Lus10008710.g ID=Lus10008710.BGIv1.0 annot-version=v1.0 MKLSVKTLKGTRFEIRVQPTDTVMAVKKQIEDVQGKDNYPCAQQLLIHNGKVLKDETTLAANEVSEDGFLVVMLSKSKTSGSAAGLSSQPASATPPTAAQ TSNSTPAPAQATVSQSTASVSDAATANPPTDTYSEAASNLVGGSSLEQTIQQIMDIGGGNWGKEAVTRALRAAYNNPERAIDYFYSVSIG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79650		AtAO1, RAD23B, ...	RADIATION SENSITIVE23B, Arabid...		Lus10008710 [exp]	0	1
AT3G62390		TBL6	TRICHOME BIREFRINGENCE-LIKE 6 ...		Lus10002430 [exp]	2.0	0.9253
AT4G00660		ATRH8	RNAhelicase-like 8 (.1.2)		Lus10014783 [exp]	2.4	0.9189
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Lus10020115 [exp]	3.3	0.9399
AT4G11030			AMP-dependent synthetase and l...		Lus10001830 [exp]	3.6	0.9055
AT4G00660		ATRH8	RNAhelicase-like 8 (.1.2)		Lus10030377 [exp]	4.6	0.9145
AT5G48940			Leucine-rich repeat transmembr...		Lus10023677 [exp]	7.2	0.9182
AT3G53850			Uncharacterised protein family...		Lus10024355 [exp]	7.3	0.9015
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10041425 [exp]	14.9	0.8658
AT2G28560		ATRAD51B, RAD51...	DNA repair (Rad51) family prot...		Lus10038467 [exp]	15.4	0.9024
AT5G59410			Rab5-interacting family protei...		Lus10040798 [exp]	15.6	0.9089

Compare expression of checked genes

Lus10008710 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.