Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08940 524 / 0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT4G01037 166 / 3e-46 AtWTF1 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G21970 143 / 3e-38 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G48040 135 / 7e-36 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT2G31290 124 / 1e-31 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT5G62990 125 / 2e-31 EMB1692 embryo defective 1692, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT3G58520 118 / 2e-29 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT1G79120 110 / 9e-27 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT3G63090 105 / 7e-25 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT4G33495 98 / 3e-22 RPD1 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005945 [exp] 158 / 3e-43 AT4G01037 582 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10029446 [exp] 157 / 8e-43 AT4G01037 588 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10016529 [exp] 143 / 2e-38 AT5G21970 561 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10010567 [exp] 137 / 4e-36 AT5G62990 509 / 2e-178 embryo defective 1692, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10000847 [exp] 130 / 2e-34 AT3G58520 501 / 1e-178 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10015979 [exp] 129 / 2e-33 AT3G58520 564 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10011327 [exp] 123 / 3e-31 AT5G48040 425 / 1e-147 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10040797 [exp] 121 / 1e-30 AT5G21970 487 / 3e-171 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10012201 [exp] 116 / 6e-29 AT5G48040 424 / 1e-147 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G097900 [exp] 552 / 0 AT4G08940 492 / 2e-174 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.014G096800 [exp] 160 / 6e-44 AT4G01037 588 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G169300 [exp] 157 / 7e-43 AT4G01037 586 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.006G218100 [exp] 150 / 5e-41 AT5G21970 566 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G233900 [exp] 130 / 2e-33 AT5G62990 498 / 6e-174 embryo defective 1692, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G230900 [exp] 129 / 2e-33 AT5G48040 484 / 9e-171 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.006G195900 [exp] 128 / 5e-33 AT3G58520 578 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.005G191100 [exp] 121 / 2e-30 AT2G31290 575 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.001G439100 [exp] 109 / 3e-26 AT1G79120 483 / 2e-170 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G220000 [exp] 101 / 2e-23 AT3G63090 499 / 7e-177 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11955 [flax] [poplar] PORR Plant organelle RNA recognition domain
Representative CDS sequence Show only first row Show all	>Lus10008711 pacid=23161961 polypeptide=Lus10008711 locus=Lus10008711.g ID=Lus10008711.BGIv1.0 annot-version=v1.0 ATGGCATGGCGCCGCATTCTCTCCGTCGTCAAGCTTCCCGTATCAGCCAAAGCCCTAACTCCACCCCTCAATCCTTCCACCCCTCCGTCAGCCAACTTCT CCACCTCCTTCCTCATCACCAAAACCCCCAAAAAATTCAAGAAGAAGCGCAAGAAGCCCGAATCCGCTCGCACCAAGCTCGTCCAGCACCCTTCCGAACA AAACCACCATTTCGAGTCCATAGTCCAACGCGATTCCTACTTCCGCTTCATCACCAGATCCAAGCAGTTCCTCTCCCAGCAGCCGGAGCACGTCCTCCGC CTCGATGACGCCGGCAAGCACTTCAAGGAGCTCGGCTTCCCTCGCGGCCGTAAAATCGCCCGCTACCTCCAACGCCACCCTCTCTTCTTCCAGACCTACC GTCACCACGATAACAAAATGTGGCTCGGGTTTTCGGATTTCATGGAGGAATTGCTCGACGAGGAAGCCTCTATTATGGATTCCATGGAATCCGACAGGGT GAATAAGGTAATTAAGCTGTTGATGATGTCCAAGGACAAGCGTATTCCCTTGAGTAAGATTCACCATTGCCGGTTATTATTCGGAATTCCTGACGATTTC CGCGATAGAGTTGTTAAGTATCCGGATCGATTGAGGATCGTGGTCGAGAGCGACGGTAGGAGAGTGCTGGAGTTAGCGAAATGGGATAGGAATTTGGCGG TGAGCCAATTGGAGAGGCAGTTTGTGGTGGATGAAGATAAAGCCAAGAGAGCGTTTAAGTTTCCGGTGAAGTATTCTAAGCATTTGGATTTAAACGAGGT GGATACAAAGACGTTGAATCTATTGCACACATTGCCTTTGGTTTCTCCATACAGTGATGGAGAAAAACTGGATCTTTGGACTCTGGAGGCTGAGAAATAC AGGGTAGGGGTTCTTCATGAGTTTCTCAACCTTACTCTGGAGAAGAGAGCATCCATTCATCATATTGTGGAGTTTAAGGATGAGTTTTGCTTGACTAGGC ATACTTATGATATGCTCAAGAGGCAGCCGAGGACTTTTTACCTTGCTGGTACAGAGATGAACTGGGTTGTGTTTCTGAAAGATGGTTATGATGAGAAGGG GAATTTGATTGATAAGGATCCACAGGTGGTTTTCAATGAGAAATTATATCGCTATGCTGATATGAAGGATGAGCAGCATTGA
AA sequence Show only first row Show all	>Lus10008711 pacid=23161961 polypeptide=Lus10008711 locus=Lus10008711.g ID=Lus10008711.BGIv1.0 annot-version=v1.0 MAWRRILSVVKLPVSAKALTPPLNPSTPPSANFSTSFLITKTPKKFKKKRKKPESARTKLVQHPSEQNHHFESIVQRDSYFRFITRSKQFLSQQPEHVLR LDDAGKHFKELGFPRGRKIARYLQRHPLFFQTYRHHDNKMWLGFSDFMEELLDEEASIMDSMESDRVNKVIKLLMMSKDKRIPLSKIHHCRLLFGIPDDF RDRVVKYPDRLRIVVESDGRRVLELAKWDRNLAVSQLERQFVVDEDKAKRAFKFPVKYSKHLDLNEVDTKTLNLLHTLPLVSPYSDGEKLDLWTLEAEKY RVGVLHEFLNLTLEKRASIHHIVEFKDEFCLTRHTYDMLKRQPRTFYLAGTEMNWVVFLKDGYDEKGNLIDKDPQVVFNEKLYRYADMKDEQH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08940			Ubiquitin carboxyl-terminal hy...		Lus10008711 [exp]	0	1
AT2G20710			Tetratricopeptide repeat (TPR)...		Lus10033698 [exp]	7.3	0.8189
AT3G27550			RNA-binding CRS1 / YhbY (CRM) ...		Lus10003667 [exp]	7.3	0.8186
AT1G08460		HDA8, HDA08, AT...	histone deacetylase 8 (.1)		Lus10013343 [exp]	8.7	0.7858
AT3G48250		BIR6	Buthionine sulfoximine-insensi...		Lus10019474 [exp]	16.1	0.8040
AT2G37510			RNA-binding (RRM/RBD/RNP motif...		Lus10023758 [exp]	22.4	0.7603
AT2G45440		DHDPS2	dihydrodipicolinate synthase (...		Lus10015861 [exp]	22.5	0.7806
AT5G67630			P-loop containing nucleoside t...		Lus10011551 [exp]	27.9	0.7724
AT2G20060			Ribosomal protein L4/L1 family...		Lus10005427 [exp]	31.8	0.7387
AT3G49240		EMB1796	embryo defective 1796, Pentatr...		Lus10022406 [exp]	32.3	0.7596
AT3G18580			Nucleic acid-binding, OB-fold-...		Lus10027237 [exp]	32.3	0.7719

Compare expression of checked genes

Lus10008711 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.