Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08850 944 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT1G35710 822 / 0 Protein kinase family protein with leucine-rich repeat domain (.1) AT1G17230 587 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 567 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G33170 563 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G44700 546 / 1e-175 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT4G26540 500 / 1e-159 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G56040 496 / 3e-158 Leucine-rich receptor-like protein kinase family protein (.1.2) AT1G17750 491 / 4e-156 AtPEPR2 PEP1 receptor 2 (.1) AT1G28440 471 / 1e-149 HSL1 HAESA-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020935 [exp] 1791 / 0 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020936 [exp] 1451 / 0 AT4G08850 793 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019036 [exp] 847 / 0 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019035 [exp] 830 / 0 AT4G08850 861 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10002293 [exp] 728 / 0 AT1G35710 781 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10004046 [exp] 710 / 0 AT4G08850 773 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10003612 [exp] 705 / 0 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10031161 [exp] 601 / 0 AT4G08850 710 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10005017 [exp] 513 / 2e-168 AT4G08850 562 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G123800 [exp] 801 / 0 AT4G08850 751 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G129100 [exp] 792 / 0 AT1G35710 863 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G120733 [exp] 788 / 0 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G120700 [exp] 788 / 0 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G122500 [exp] 787 / 0 AT1G35710 846 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G060084 [exp] 766 / 0 AT4G08850 724 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.012G124200 [exp] 761 / 0 AT4G08850 743 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G060400 [exp] 754 / 0 AT4G08850 728 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.012G124100 [exp] 744 / 0 AT4G08850 711 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.014G195100 [exp] 739 / 0 AT1G35710 681 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10008712 pacid=23161936 polypeptide=Lus10008712 locus=Lus10008712.g ID=Lus10008712.BGIv1.0 annot-version=v1.0 ATGGCAACTCCAATCTTGAACAAGCTTCCAACTTTCTTCTTCTTCTTCTTCTTCACAATTCTCCTCACTTCACCACTCCCCACATCGTCCGACTCAGCAT CGGAAGCAGCAGCGCTTCAGAAATGGGCATCAACCCTTCACAACCCGCGACAATCCAACATCTCCACCTGGCCAACCTCCGCCGCCGCCGCTACCACCCC CTGTGGCTGGATCGGAATATCCTGCTCCCGCGGCGGAAGCGTTCTCCGGTTGAACCTAACAAGCTCCAACCTAAACGGTACGCTTCAAGACTTCCCCTTT TCCTCACTCCCTAACCTCTCCTACTTCGAGCTCAGCGTCAACGACCTCTACGGCGTCATCCCGCCACAAATCGGCCTCCTCACCAACCTAATCTACCTCG ATTTGTCTCTCAACATGTTCACCGGTTCAATCCCGCTGGAGATCGGACTCCTCACCAAGCTCGACACTCTCCATCTCATCCAGCTCCAACTCAACGGCTC GATTCCCGACGAAATCGGGAATTTGAAATCCCTAACTGAGCTCGCTCTGTACACAAACTTCCTCGACGGTCCGATTCCTTCTTCAATTGGAAACTTGACG AGATTGCAACGCTTGTATCTCTACGACAACCAGCTCTCCGGTCAAATCCCTGCAGAAATCGGTAACCTTGTTAATTTGACTGAAGCTTTCCTCGACACAA ATCAATTATCCGGTTCAATCCCTAAAAGTATTGGGAAGTTAAAAAACTTGAACACTCTTTACATGTTCTTGAACCACCTCAACGGCTCTCTCCCTGATGA AATTGGGAACTTGACGTCGCTACAGTACCTTAGCCTCCATAGCAATAACTTCACTGGAACCATTCCTCCATCTATGGGAAGGTTGACTTCGATTGTTCAG TTCCATCTCTACAACAACCAGCTCTCCGGCAGGATTCCACCGGAGCTGGGGAACTTGAACTTCGTTGAGGATTTGGAGCTGAGTGAGAATCAGCTCACTG GTCCTATTCCTTCCTCCATTGGAAACTTGACCTCTTTGCAGATTTTGTTTCTTCGTGTCAACCGTCTCTCTGGTTTCTTACCTGATGATATGTCGAAACT GACCAATCTGAAGGTTCTGCAGCTGGACAGTAACAGCTTTACTGGATTTCTCCCTGAGAACATCTGTGGGAGTCAAAGTCTCATCAACTTCACTGCCTAT GATAACAACTTCACAGGTCCAGTTCCTAGATGCTTCAAGAACTGCACGACTTTCGTCCGGGTTCGCCTGGAAAACAACCAGTTCACTGGAAATGTTTCCG AGGATTTCGGTGTGTACCCGGATTTGCAGTTCATGGATCTCAGCGGGAATAACTTCTATGGTGAGGTGTCGCGCAACTGGGGGTCCTGTCCGAATTTGGC TACATTGCGGATTTCGGGGAACAATATCAGCGGTGTTATCCCTCCAGAGATTGGTAATATTTCTCAGCTACAAGCGCTTGATCTTTCCTCTAATCAATTA GTCGGTCAGATCCCGAAACAGCTTGCTAATCTGACTTCCTTGGCGAGGCTGATACTCTATGGTAATCAACTCTATGGGGCTATCCCTTCAGAGTTTAATT CATTTACTGAAATGGAAGTGCTGGACCTGTCTTCAAATCGACTCAACCAGTCGCTTCCAGCGAGCTTGGGCAACTTCGCGCAGCTAAACTACTTGAACTT GAGCAACAATGAGTTTAGCCAGAGAATTCCTGACCAGTTGGGAAATCTGGTTCATTTGACAACTCTTGATCTGAGCCGGAACTCGCTCAGCGGGTCGATT CCGGCAAGACTGAGTTCCTTATCCAGCTTGGAGCTCCTGAACATATCAAGAAACGATCTTTCTGGTTCTATCCCAGATGGGTTTGCACAAATCCCTTTAC AGACGGTGGACATATCACATAACAAACTGCAGGGTGCTCTACCAAGCAGCAAAGCATTTCAAAATGCTTCAATTGAAGAAGTAGTGGGGAATAGCGGCTT GTGTGGGAACATGGAAAGCTTAGACCCGTGTCCTTCCACAACAACAATGAAGGATTCATCAAAGAAAAGCCGAAAATTTTGGTTCTTGGTCATTTTCCTA CCTGTTTTAGCAGCAGTGATACTGGTATTGGCAATGTTCTGTGTATGCCGAAAAGGCAGAATAGATCCGGATGCTGAACCGCTACAGCAGCAGGAAGAGG ATATCTTACTAATGCCAGGTTTCGATGGGAAGATAATGTACTCGGAGATCGTGAAAGCAACCGATAAATTCGACTCCAAGTATTGCGTGGGGAAAGGAGG GTATGGCAGCGTGTACAAAGCAATGCTGCCATCTGGGATCACTGTGGCAGTTAAAAAGGTCCATCCTTTTCGTGACAGCGAGGGGGCTTCTCAGGAGGAG TTCTTGAGAGAGATCAAAGCCCTGACCGAGATAAGGCATCGTAACATCGTTAAACTCTATGGATTCTGCTCCCATTCGCGAGACTCTTTCTTGGTTTACG AGTACCTCGAGAGAGGAAGTCTTGCATCCATCCTGAGAGATGAGCAAGAAGCTAGAGAATTGGATTGGGAGAAGAGGGTGAATATTGTGAGAGGCGTGGC TCATGCCTTGTCTTACTTGCACCACGACTGCTCCATCCCGATCGTCCACAGAGACATTACTAGCAACAATGTGTTGTTGGATTCCAATTACGAAGTTCGA GTGTCAGATTTTGGGACGGCCAAACTTCTCAACCATGATACCTCCCACTGGACTGCACAGGCCGGCACTCGTGGCTACATTGCTCCAGAGCTGGCGTACA CTATGAAAGTAACGGAGAAATGTGACGTGTACAGCTTCGGCGTGTTGGCGCTGGAAGTGATCAGAGGGGATCATCCTGGGGAAATTGTGCTTTCGTTGGC TTCTTCTACTGCGACAGACAATGTGTTGCCACTTGACGATCTGGTAGACCAGCGTCTTGGGGCTCCTTCGACGTTAATTCGCGAGGAACTGGAAACGGTG TTAAGGGTTGCAGCTATATGTTTGAGCGCTGATCCGCAGTTTAGGCCGGAGATGAGATTGGCTTCGCAGATGTTGTCAAAGGACCAAATGAGCGTTCCTT ACGAGAAAAAATAG
AA sequence Show only first row Show all	>Lus10008712 pacid=23161936 polypeptide=Lus10008712 locus=Lus10008712.g ID=Lus10008712.BGIv1.0 annot-version=v1.0 MATPILNKLPTFFFFFFFTILLTSPLPTSSDSASEAAALQKWASTLHNPRQSNISTWPTSAAAATTPCGWIGISCSRGGSVLRLNLTSSNLNGTLQDFPF SSLPNLSYFELSVNDLYGVIPPQIGLLTNLIYLDLSLNMFTGSIPLEIGLLTKLDTLHLIQLQLNGSIPDEIGNLKSLTELALYTNFLDGPIPSSIGNLT RLQRLYLYDNQLSGQIPAEIGNLVNLTEAFLDTNQLSGSIPKSIGKLKNLNTLYMFLNHLNGSLPDEIGNLTSLQYLSLHSNNFTGTIPPSMGRLTSIVQ FHLYNNQLSGRIPPELGNLNFVEDLELSENQLTGPIPSSIGNLTSLQILFLRVNRLSGFLPDDMSKLTNLKVLQLDSNSFTGFLPENICGSQSLINFTAY DNNFTGPVPRCFKNCTTFVRVRLENNQFTGNVSEDFGVYPDLQFMDLSGNNFYGEVSRNWGSCPNLATLRISGNNISGVIPPEIGNISQLQALDLSSNQL VGQIPKQLANLTSLARLILYGNQLYGAIPSEFNSFTEMEVLDLSSNRLNQSLPASLGNFAQLNYLNLSNNEFSQRIPDQLGNLVHLTTLDLSRNSLSGSI PARLSSLSSLELLNISRNDLSGSIPDGFAQIPLQTVDISHNKLQGALPSSKAFQNASIEEVVGNSGLCGNMESLDPCPSTTTMKDSSKKSRKFWFLVIFL PVLAAVILVLAMFCVCRKGRIDPDAEPLQQQEEDILLMPGFDGKIMYSEIVKATDKFDSKYCVGKGGYGSVYKAMLPSGITVAVKKVHPFRDSEGASQEE FLREIKALTEIRHRNIVKLYGFCSHSRDSFLVYEYLERGSLASILRDEQEARELDWEKRVNIVRGVAHALSYLHHDCSIPIVHRDITSNNVLLDSNYEVR VSDFGTAKLLNHDTSHWTAQAGTRGYIAPELAYTMKVTEKCDVYSFGVLALEVIRGDHPGEIVLSLASSTATDNVLPLDDLVDQRLGAPSTLIREELETV LRVAAICLSADPQFRPEMRLASQMLSKDQMSVPYEKK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08850			Leucine-rich repeat receptor-l...		Lus10008712 [exp]	0	1
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Lus10023271 [exp]	5.4	0.9432
AT1G13550			Protein of unknown function (D...		Lus10031914 [exp]	7.5	0.9252
AT3G51660			Tautomerase/MIF superfamily pr...		Lus10000344 [exp]	11.2	0.9331
AT3G12910	NAC		NAC (No Apical Meristem) domai...		Lus10036194 [exp]	14.1	0.9336
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10038983 [exp]	16.0	0.9400
AT3G47570			Leucine-rich repeat protein ki...		Lus10019525 [exp]	17.4	0.9334
AT5G04260		WCRKC2	WCRKC thioredoxin 2 (.1)		Lus10037975 [exp]	28.1	0.8805
AT2G23770			protein kinase family protein ...		Lus10019661 [exp]	39.0	0.9325
AT3G11920			glutaredoxin-related (.1)		Lus10012909 [exp]	42.7	0.9198
AT2G23770			protein kinase family protein ...		Lus10000577 [exp]	45.5	0.9311

Compare expression of checked genes

Lus10008712 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.