Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78300 459 / 2e-165 14-3-3OMEGA, GF14OMEGA, GRF2 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) AT1G35160 451 / 2e-162 14-3-3PHI, GF14PHI, GRF4 ,GF14 PHI GENERAL REGULATORY FACTOR 4, 14-3-3 PROTEIN G-BOX FACTOR14 PHI, GF14 protein phi chain (.1.2) AT4G09000 450 / 6e-162 GF14CHI, GRF1 GENERAL REGULATORY FACTOR1-G-BOX FACTOR 14-3-3 HOMOLOG ISOFORM CHI, general regulatory factor 1 (.1.2) AT3G02520 431 / 4e-154 GENERALREGULATORYFACTOR7, GF14NU, GRF7 general regulatory factor 7 (.1) AT5G38480 424 / 1e-151 RCI1, GRF3 general regulatory factor 3 (.1.2) AT5G16050 405 / 4e-144 GF14UPSILON, GRF5 general regulatory factor 5 (.1) AT5G10450 395 / 7e-140 14-3-3lambda, AFT1, GF14LAMBDA, GRF6 14-3-3 PROTEIN G-BOX FACTOR14 LAMBDA, G-box regulating factor 6 (.1.2.3.4) AT5G65430 392 / 4e-139 14-3-3KAPPA, GF14KAPPA, GRF8 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3) AT1G26480 353 / 2e-123 GF14IOTA, GRF12 general regulatory factor 12 (.1) AT1G34760 346 / 6e-121 RHS5, GF14OMICRON, GRF11 ROOT HAIR SPECIFIC 5, general regulatory factor 11 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020940 [exp] 491 / 4e-178 AT1G78300 483 / 2e-175 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) Lus10036481 [exp] 468 / 6e-169 AT1G78300 481 / 1e-174 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) Lus10010349 [exp] 439 / 1e-157 AT1G78300 454 / 5e-164 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) Lus10017584 [exp] 432 / 1e-154 AT3G02520 471 / 1e-170 general regulatory factor 7 (.1) Lus10033545 [exp] 428 / 4e-153 AT3G02520 470 / 4e-170 general regulatory factor 7 (.1) Lus10035934 [exp] 386 / 9e-137 AT5G65430 450 / 1e-162 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3) Lus10025727 [exp] 382 / 4e-135 AT5G65430 454 / 3e-164 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3) Lus10040534 [exp] 375 / 7e-132 AT5G65430 439 / 1e-157 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3) Lus10014899 [exp] 370 / 4e-130 AT5G65430 438 / 2e-157 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G162400 [exp] 466 / 3e-168 AT1G78300 475 / 2e-172 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) Potri.002G099800 [exp] 456 / 2e-164 AT1G78300 473 / 3e-171 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) Potri.004G101700 [exp] 431 / 3e-154 AT3G02520 472 / 5e-171 general regulatory factor 7 (.1) Potri.017G113300 [exp] 426 / 3e-152 AT3G02520 468 / 2e-169 general regulatory factor 7 (.1) Potri.005G157700 [exp] 374 / 4e-132 AT5G65430 427 / 1e-153 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3) Potri.002G103800 [exp] 363 / 8e-128 AT5G65430 429 / 4e-154 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3) Potri.001G392200 [exp] 357 / 4e-125 AT2G42590 428 / 2e-153 general regulatory factor 9 (.1.2.3) Potri.011G110900 [exp] 356 / 7e-125 AT2G42590 424 / 4e-152 general regulatory factor 9 (.1.2.3) Potri.008G095000 [exp] 348 / 1e-121 AT1G26480 440 / 3e-158 general regulatory factor 12 (.1) Potri.010G159300 [exp] 347 / 3e-121 AT1G26480 466 / 2e-168 general regulatory factor 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00244 [flax] [poplar] 14-3-3 14-3-3 protein
Representative CDS sequence Show only first row Show all	>Lus10008715 pacid=23161951 polypeptide=Lus10008715 locus=Lus10008715.g ID=Lus10008715.BGIv1.0 annot-version=v1.0 ATGGCAAGTTCGGCACGCGAAGAGAATGTCTACATGGCTAAGCTCGCCGAGCAGGCCGAGCGCTACGAGGAGATGGTTGACTTCATGGAGAAGGTCTCCG CCTCGATCGATGGCGATGAGCTCACTGTCGAGGAGCGAAACCTCCTCTCGGTCGCCTACAAGAACGTGATCGGTGCACGCCGCGCCTCGTGGCGTATCAT TTCCTCCATCGAGCAGAAGGAGGAGAGCCGCGGCAACGAGGACCATGTCAACACGATCCGCGACTACAGGAGCAAGATTGAGACCGAGCTCTCCGGGATC TGCGACGGGATCTTGAAATTGCTCGACACCAGGCTCATTCCTTCCGCCGCTTCCGGTGATTCGAAGGTCTTCTACTTGAAGATGAAGGGTGATTACCACA GGTACCTTGCTGAGTTCAAGACCGGAGCCGAGAGGAAGGAGGCCGCTGAAAGCACCCTCAGCGCTTACAAATCCGCTCAGGAAATTGCCAATTCTGAATT GGCTCCAACCCACCCTATCCGTCTTGGATTGGCTCTCAACTTCTCAGTCTTTTATTATGAGATCCTGAATTCCCCTGATCGCGCTTGTAATCTCGCCAAA CAGGCATTCGATGAAGCCATTGCAGAGTTGGATACCCTGGGAGAGGAATCCTACAAGGACAGCACTTTGATCATGCAACTTCTCCGTGACAATCTCACCC TCTGGACTTCCGACATGCAGACGAGATCAAGGACGCAGCACCAGCTGCCCCCAAAGGAGGGGAGGAACAGCAATGAGTTCCCGGTTATGGCCAAGGGAAC TCGGTTTGCTGCAATGCTAGTTAGGTATGCGATTCTCCTCTAA
AA sequence Show only first row Show all	>Lus10008715 pacid=23161951 polypeptide=Lus10008715 locus=Lus10008715.g ID=Lus10008715.BGIv1.0 annot-version=v1.0 MASSAREENVYMAKLAEQAERYEEMVDFMEKVSASIDGDELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVNTIRDYRSKIETELSGI CDGILKLLDTRLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLSAYKSAQEIANSELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAK QAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQTRSRTQHQLPPKEGRNSNEFPVMAKGTRFAAMLVRYAILL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78300		14-3-3OMEGA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10008715 [exp]	0	1
AT1G78300		14-3-3OMEGA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10020940 [exp]	1.0	0.8400
AT1G35780			unknown protein		Lus10033456 [exp]	2.4	0.8262
AT4G16143		IMPA-2	importin alpha isoform 2 (.1.2...		Lus10036452 [exp]	3.0	0.7931
AT3G44200		IBO1, ATNEK6	"NIMA \(never in mitosis, gene...		Lus10013338 [exp]	5.7	0.7843
AT1G49740			PLC-like phosphodiesterases su...		Lus10019843 [exp]	7.1	0.6978
AT3G25800		PP2AA2, PR65, P...	protein phosphatase 2A subuni...		Lus10034299 [exp]	9.8	0.7614
AT1G75780		TUB1	tubulin beta-1 chain (.1)		Lus10017217 [exp]	13.2	0.7718
AT1G78300		14-3-3OMEGA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10036481 [exp]	13.2	0.7510
AT2G23070			Protein kinase superfamily pro...		Lus10011526 [exp]	14.5	0.7099
AT2G36830		TIP1;1, GAMMA-T...	TONOPLAST INTRINSIC PROTEIN 1;...		Lus10022611 [exp]	15.0	0.7180

Compare expression of checked genes

Lus10008715 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.